Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28650 267 / 1e-82 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G08590 197 / 2e-57 Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 169 / 1e-47 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT1G28440 152 / 1e-41 HSL1 HAESA-like 1 (.1) AT5G51350 151 / 2e-41 MORE LATERAL GROWTH1 (MOL1) MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G28490 135 / 1e-35 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT2G25790 134 / 3e-35 Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 132 / 7e-35 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G72180 127 / 4e-33 Leucine-rich receptor-like protein kinase family protein (.1) AT3G19700 127 / 6e-33 IKU2 HAIKU2, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025943 [exp] 267 / 9e-83 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10000814 [exp] 258 / 3e-79 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027951 [exp] 255 / 3e-78 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027221 [exp] 177 / 3e-50 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10038930 [exp] 171 / 3e-48 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10019067 [exp] 162 / 3e-45 AT5G51350 971 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10036321 [exp] 160 / 1e-44 AT5G51350 957 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10008849 [exp] 142 / 4e-38 AT1G73080 648 / 0.0 PEP1 receptor 1 (.1) Lus10013968 [exp] 141 / 7e-38 AT1G28440 1372 / 0.0 HAESA-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G256500 [exp] 286 / 1e-89 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G021700 [exp] 270 / 9e-84 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 256 / 7e-79 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G107600 [exp] 164 / 6e-46 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.001G126100 [exp] 160 / 1e-44 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.006G189000 [exp] 148 / 3e-40 AT5G51350 1058 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.018G113000 [exp] 146 / 9e-40 AT5G51350 1014 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.004G049100 [exp] 139 / 3e-37 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.005G241500 [exp] 139 / 3e-37 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G058100 [exp] 138 / 9e-37 AT1G28440 1309 / 0.0 HAESA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10014243 pacid=23164740 polypeptide=Lus10014243 locus=Lus10014243.g ID=Lus10014243.BGIv1.0 annot-version=v1.0 ATGCAGAGGGAGAACAACAAGCTAGTGGTGCATACAGGCAAGGACAGCACCGAGGAGGAAAGTAGACTGGCAATCAACAAGCTTCGTCGCTGCGAATTAT ACACCATGGAGCTAATGGATACATCTGATAGTGCAGGACAGTCAGCATTACTTGGTTTAGAAGAGACTTCGAAACCTACAGTCGGCCAGTCAGAGGTGGC AAGTTCATTGCCAAGTGACCTGGGCAGGGAATCTCCATTGCAGTGGGTAGATGTTTCGTCGAATTCCTTCTCCGGACTGATTCCTGCGAGCTTGTGCAAC GGTGGCAACCTCACCAAGCTCATACTCTTCAACAATGGCTTCTCCGGTACCGTGCCTGCTAGTCTTTCGTCGTGTCAATCGCTAGTTCGCGTAAGGATGC AGAACAATTTACTTACCGGTACGATTCCGGTTGGCTTTGGCAGCCTTGGGAAGCTTCAGAGGTTAGAGTTGGCAAACAACAGCCTTACAGGTCAAATCCC TAATGATCTCGGCTCTTCCACATCTCTTACTTTCATTGATCTCTCCAGAAACAACCTCAGATCTTATCTCCCTTCCACAATTCTGTCCATTCCCAATCTT CAATCCTTCATGCCCTGGGGAAACAATCTTGAAGGCGAAATCCCTGGCCAGTTTCAGGGCTGTCCTGCTCTTACTGTTCTTGATCTCTCGTCAAACAATT TCTCCGGTACGATTCCGGCCAGCGTTGCCTCCTGTGAGAGACTAGTGAATTTGAATCTCAATAATCAACAATATAGCTTCATTCTTTCGACTTGA
AA sequence Show only first row Show all	>Lus10014243 pacid=23164740 polypeptide=Lus10014243 locus=Lus10014243.g ID=Lus10014243.BGIv1.0 annot-version=v1.0 MQRENNKLVVHTGKDSTEEESRLAINKLRRCELYTMELMDTSDSAGQSALLGLEETSKPTVGQSEVASSLPSDLGRESPLQWVDVSSNSFSGLIPASLCN GGNLTKLILFNNGFSGTVPASLSSCQSLVRVRMQNNLLTGTIPVGFGSLGKLQRLELANNSLTGQIPNDLGSSTSLTFIDLSRNNLRSYLPSTILSIPNL QSFMPWGNNLEGEIPGQFQGCPALTVLDLSSNNFSGTIPASVASCERLVNLNLNNQQYSFILST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28650			Leucine-rich repeat transmembr...		Lus10014243 [exp]	0	1
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10029937 [exp]	5.3	0.6894
AT3G28580			P-loop containing nucleoside t...		Lus10014497 [exp]	16.4	0.7348
AT5G53110			RING/U-box superfamily protein...		Lus10025491 [exp]	17.1	0.7106
					Lus10024072 [exp]	22.2	0.6373
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10041282 [exp]	24.5	0.6723
AT2G21237			unknown protein		Lus10031077 [exp]	45.7	0.6783
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10006219 [exp]	60.7	0.6557
AT1G47710			Serine protease inhibitor (SER...		Lus10034364 [exp]	87.5	0.6587
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10015195 [exp]	92.7	0.5826
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10041804 [exp]	110.2	0.5796

Compare expression of checked genes

Lus10014243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.