Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12700 426 / 6e-141 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G63080 405 / 4e-134 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 403 / 4e-133 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 399 / 9e-132 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 397 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 392 / 1e-128 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 390 / 3e-128 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63150 387 / 4e-127 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 386 / 9e-127 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 382 / 3e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014244 [exp] 1094 / 0 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10003433 [exp] 1066 / 0 AT1G12700 396 / 2e-129 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014247 [exp] 765 / 0 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008593 [exp] 736 / 0 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10003427 [exp] 717 / 0 AT1G12700 291 / 8e-92 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10022861 [exp] 661 / 0 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014242 [exp] 646 / 0 AT1G62930 256 / 5e-78 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009201 [exp] 600 / 0 AT1G12700 274 / 3e-86 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10029737 [exp] 581 / 0 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G038400 [exp] 541 / 0 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 531 / 0 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 528 / 0 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 526 / 0 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G149800 [exp] 523 / 5e-180 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 521 / 1e-179 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242500 [exp] 518 / 2e-178 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050500 [exp] 517 / 4e-178 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G021200 [exp] 516 / 4e-178 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074500 [exp] 514 / 2e-177 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10014245 pacid=23164732 polypeptide=Lus10014245 locus=Lus10014245.g ID=Lus10014245.BGIv1.0 annot-version=v1.0 ATGGCGAAGTTTCCCTATTCTTCTGCTGCTTCTCCCACGGCGGCTCTCTCCTCTCATCTCCGTTCCAATTGGACTACTGCCATTCGTACCTCCGATTCTC CACCTTTCACTACCATCAAAGGAGCTTTGGATTCTTTTAATAGCATGCTCTGCTTGAATCCCAGACCTCCCGCTGCAAAATTTTGTCAGATATTTGCATT TCTTGTGAAGATGAATGCTTATGAAGCTGCTGTTTCTGTATCTAGGCGAATGGATTCCGCTGGGTTGGTATTTGATCTTTTCAAATTTACTGCATTGATT CGTTGCTTCTGCAAATTGGGTCGTGCTGGTTTTGCATTCTCAGTATTGGGAAAAATATTTAAGCTTGGTCATCAACCTGATGTGGTCACTTTTAATATCT TGATTGATGCATTGTGCAAAGATGGAAAAGTTGCTCATGCTGCAAATTTGATGGATAAGATTGTTTCTTTAGGATTTCAACCAGATGTTATCACTTATAG TTCTATCATCAATGGCCTGTGTAAAATGGGTGAAACTAGTGCTGCTCAGAGATTGCTGGAGAAAATGGAAGATGGAGGTTGTCAACCAGATGTGGTTACT TACAGTACAGTTATAGATAGCTTATGTAAGGATGGGTTGATATCTGAAGCCTTAGATGAGTTTTACAAGATGAAGGATAGAAACTGTTCACCTGATGTTT GTAGTTACAGTTGTTTGATTCATGGTTTATGTGTTTCAAGTCGAAAGAATGAAGCTATATTGTTGTTCGGTGAAATGTTAGAAAGGAATGTAATTCCTGA TGTAGTCACCTATAACATTCTGATTGATTCTCTTTGCAAAGATGGAATGGTCCGTGAGGCTAAAGATATTGTCAAAGTGATGATGCAAAAAGGACAGCAT TCGGATATCTTCACTTACAATTCATTGCTGGATGGGTATTGTTTGCGTAATGAATTAGACAAAGCTCGTAACTTGTTCAATTCTTTAGGTAGCATGGAAT TGGAGCCGGACGTTCATACTTATTCTATGATGATTAATGGATATTGTAAGAGTGACAGGTTCAGTGAAGCCAAACAGTTGTTGAATGATATGATTAAAAA GGATTTAACTCCGAACACTGTTACGTATAGTACTCTCGTGGATGGGTTTTGCCAAGCAGGGAGGTTCAAAGATGCAGAAACGGTTTTAAAGAAAATGTGC CATCAGGGACAGCTTCCGGATGTCGCGACATATACCAGTTTGCTAAATGGTTGGTGCAAAATAGGTCATCTGGACAAGGCATTAGCTCTATTCCAAGAAA TAAAAAGTAGTCGGTTGAAGCCTGATGTTGTCATGTATACTATTCTTATTGACAGTTTGTGGAAAGCAGGAAGGGGTAAGGAAGCAAGGGACATGTTTTC TGAGCTCTCTAAAGAAAGGGATTTACAACCTAATTCCTACACATACAACACAGTAATTGATGGACTTTGTAGGCATGGTTTAGTAGATGAGGCATATGAT TTGTTTAGAACAATGGAGAGAAGTATATTCCCGCCAGATATTTGCACTTATAATGTGATCATCCATGGATTTCTTCGATATAAAGATCCACTTGAAGCAG TAGAGCTAATTCAAGAGATGGTAAATAAGGGCTTCTCAGCTGATGCAACCACATTAGCCTTGCTGATAGAATTGTTGCCCAAAAACCAGCTAGATCATCC ACTTTGGAGAAAGCTCTTAGGTGATTCTTATGTGGATAGAGAAGAGATTAGGTCTGAGGGTATATCAGCAGAGAAAACCTCAAAAGGTTAG
AA sequence Show only first row Show all	>Lus10014245 pacid=23164732 polypeptide=Lus10014245 locus=Lus10014245.g ID=Lus10014245.BGIv1.0 annot-version=v1.0 MAKFPYSSAASPTAALSSHLRSNWTTAIRTSDSPPFTTIKGALDSFNSMLCLNPRPPAAKFCQIFAFLVKMNAYEAAVSVSRRMDSAGLVFDLFKFTALI RCFCKLGRAGFAFSVLGKIFKLGHQPDVVTFNILIDALCKDGKVAHAANLMDKIVSLGFQPDVITYSSIINGLCKMGETSAAQRLLEKMEDGGCQPDVVT YSTVIDSLCKDGLISEALDEFYKMKDRNCSPDVCSYSCLIHGLCVSSRKNEAILLFGEMLERNVIPDVVTYNILIDSLCKDGMVREAKDIVKVMMQKGQH SDIFTYNSLLDGYCLRNELDKARNLFNSLGSMELEPDVHTYSMMINGYCKSDRFSEAKQLLNDMIKKDLTPNTVTYSTLVDGFCQAGRFKDAETVLKKMC HQGQLPDVATYTSLLNGWCKIGHLDKALALFQEIKSSRLKPDVVMYTILIDSLWKAGRGKEARDMFSELSKERDLQPNSYTYNTVIDGLCRHGLVDEAYD LFRTMERSIFPPDICTYNVIIHGFLRYKDPLEAVELIQEMVNKGFSADATTLALLIELLPKNQLDHPLWRKLLGDSYVDREEIRSEGISAEKTSKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10014245 [exp]	0	1
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10014244 [exp]	1.4	0.8252
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Lus10003429 [exp]	2.0	0.8204
AT5G12220			las1-like family protein (.1.2...		Lus10026818 [exp]	6.0	0.8136
AT3G07610		IBM1	increase in bonsai methylation...		Lus10015260 [exp]	15.9	0.8142
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Lus10014242 [exp]	30.7	0.7034
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10007337 [exp]	34.5	0.8117
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10017774 [exp]	39.7	0.7884
AT1G06590			unknown protein		Lus10034176 [exp]	44.7	0.7861
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	54.4	0.7609
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10000256 [exp]	55.1	0.7455

Compare expression of checked genes

Lus10014245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.