Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28650 91 / 2e-21 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G08590 70 / 3e-14 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20940 63 / 1e-11 Leucine-rich receptor-like protein kinase family protein (.1) AT2G24130 61 / 4e-11 Leucine-rich receptor-like protein kinase family protein (.1) AT2G41820 60 / 8e-11 Leucine-rich repeat protein kinase family protein (.1) AT5G44700 58 / 4e-10 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G48940 57 / 8e-10 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G20140 57 / 1e-09 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G65240 56 / 2e-09 Leucine-rich repeat protein kinase family protein (.1.2) AT1G25320 56 / 2e-09 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014243 [exp] 145 / 3e-43 AT4G28650 268 / 3e-83 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10027951 [exp] 100 / 2e-24 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000814 [exp] 97 / 1e-23 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10038544 [exp] 64 / 5e-12 AT4G20940 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10023260 [exp] 60 / 1e-10 AT4G20940 704 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10030068 [exp] 59 / 2e-10 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10002579 [exp] 58 / 2e-10 AT5G21090 275 / 3e-94 Leucine-rich repeat (LRR) family protein (.1) Lus10038598 [exp] 59 / 4e-10 AT3G47570 671 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014236 [exp] 58 / 4e-10 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G256500 [exp] 110 / 4e-28 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G021700 [exp] 103 / 5e-26 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 92 / 5e-22 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G107600 [exp] 62 / 1e-11 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.011G163700 [exp] 62 / 2e-11 AT4G20940 946 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.015G080800 [exp] 61 / 3e-11 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G126100 [exp] 61 / 6e-11 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.019G099200 [exp] 61 / 7e-11 AT4G08850 654 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129400 [exp] 60 / 1e-10 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.001G465800 [exp] 59 / 2e-10 AT4G20940 915 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10014246 pacid=23164719 polypeptide=Lus10014246 locus=Lus10014246.g ID=Lus10014246.BGIv1.0 annot-version=v1.0 ATGGTTTTCACAAATTTATGGGTTTGTTTTAGTTTCACAACCAGTTTTCAGGTTCAGTTCCTGAAACCCTTGGGGATTTGCCTCAGTTGCAGGTCTTGGA GCTTTGGAACAATTCTTTCTCAGGTTCATTGCCAAGTGACCTGGGCAGGGAATCTCCATTGCAGTGGTAGATGTTTCGTCGAATTCCTTCTCCAGACTGA TTCCTGCGAGCTTGTGCAATGGTGGCAACCTCACCAAGCTCATACTCTTCAACAATGGCTTCTCCGCCTTGGGAAGCTTCAGAGATTAGAGTTAGCAAAC AAAAGCCTTACAGGTCAAATCCCTAATGATCTCGGCTCTTCCACGTCTCTTACTTTCATTGATCTTTCAAGAAATGACCTCATATCTTATCTCCCTTCCA CAATTCTGTCCATCCCCAATCTTCAATCCTTCATGGCCTCGGGAAACAATCTGGAATGCGAAATCCCTGGCCAGTTTCAGGGCTGTCCTGCTCTTTCTGT TATTGATCTCTCGTCAAACAATTTCTCCGGTACGATTCGTTAA
AA sequence Show only first row Show all	>Lus10014246 pacid=23164719 polypeptide=Lus10014246 locus=Lus10014246.g ID=Lus10014246.BGIv1.0 annot-version=v1.0 MVFTNLWVCFSFTTSFQVQFLKPLGICLSCRSWSFGTILSQVHCQVTWAGNLHCSGRCFVEFLLQTDSCELVQWWQPHQAHTLQQWLLRLGKLQRLELAN KSLTGQIPNDLGSSTSLTFIDLSRNDLISYLPSTILSIPNLQSFMASGNNLECEIPGQFQGCPALSVIDLSSNNFSGTIR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28650			Leucine-rich repeat transmembr...		Lus10014246 [exp]	0	1
AT5G22450			unknown protein		Lus10000530 [exp]	7.4	1.0000
					Lus10003536 [exp]	9.9	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	12.8	1.0000
					Lus10011832 [exp]	14.3	1.0000
					Lus10011078 [exp]	14.6	1.0000
					Lus10022518 [exp]	15.0	1.0000
					Lus10011425 [exp]	16.3	1.0000
					Lus10023589 [exp]	17.2	1.0000
					Lus10028667 [exp]	19.9	1.0000
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	20.6	1.0000

Compare expression of checked genes

Lus10014246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.