Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20310 130 / 5e-33 RIN13 RPM1 interacting protein 13 (.1) AT4G28690 105 / 3e-24 unknown protein AT4G27660 91 / 3e-21 unknown protein AT5G54150 88 / 2e-20 unknown protein AT5G54148 80 / 5e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025944 [exp] 890 / 0 AT2G20310 143 / 1e-37 RPM1 interacting protein 13 (.1) Lus10000498 [exp] 164 / 2e-44 AT2G20310 124 / 1e-30 RPM1 interacting protein 13 (.1) Lus10032928 [exp] 86 / 4e-19 AT4G27660 122 / 4e-35 unknown protein Lus10015578 [exp] 80 / 2e-17 AT4G27660 111 / 2e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G255400 [exp] 236 / 6e-71 AT4G28690 138 / 2e-35 unknown protein Potri.012G006501 [exp] 94 / 2e-22 AT4G27660 122 / 2e-35 unknown protein Potri.015G003200 [exp] 92 / 3e-21 AT4G27660 117 / 3e-33 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014249 pacid=23164720 polypeptide=Lus10014249 locus=Lus10014249.g ID=Lus10014249.BGIv1.0 annot-version=v1.0 ATGCCGATGGATCTTTCTCCGTTAATCTTCGATATCAGCTCCGATGAGGAGACCCCGGCATTCAATGATCTGAGTGGTGGAGACGACGATCATAATTGGT TGTCGGAAATTCTTCAGAAAGTTAATCAAGAGACGGATGATTCCGATGATGTGGTGGTGGTCGGGGAGTATAACCCTTCAAAGCCAAAGGTGCTGACCTC CAAGTCGTCGGAACCGTTGAAGAATTTCGAGGATGATGATTGCGTGATTTTAGATGGTGACCCGGATAAGCCGGCAGAGGCTACGGAGAACAACGCAGCC GATGACGAGGATGATGTGCTTGTTGTGGGCGAGACGGGGCAGGTTGCTTGCAGAGATTATCCACATTCTCGCCATCTCTGTCTCAAATTTCAATTCAGTT CTACCCTACACACTGAGCATTGCAGCCTGTGTCACTGTTATGTCTGCGATTCTCCTGCTCCATGTGCAAATTGGGGTACTGGACTCTCCAGTACTGATCA TTGTCATGCTACAGATAAACAACAATCATGGAAAACTATGAGGGAAAATTCCAGGAGGGACAAAGATAGTTCAGTAACCGTATCAAGTGCTCCAAATTCT CTTCAAAAGGCTGTGACCCAACTTAATGAGATCGTCCATTTCGAAAATATTATACAATTGACGTCCAATATGGAAGCACATACTCAGGTTACACGGCCAA CTACAGTCCGAGCTTGCTCAACTTTTGGTGCTCTACCAAATATCATAAGTCGGAGCAGAGCTCCACAGAGAGGGTATTTTCCCCGAATTCCACAGCCAGT ACTTGGTGCTCGGCATAAGAATATGTTACGGCGAGCTAGATCTCAAAATGACAATTTTAGCCGACAGTTCATCTCTGATGCAATGATGAAGAATAAGACG TTTGATGTTGGTTTCATGACCAATGAAGCTCAGTATGGCACTTCCAATAACATGAACAATGTTTCCGGTGCAGCATATGCAAGGAATCTCATTCCATTTG AGCAGCAGAATGCCGTACCAGAGATGGTTAATATGAGTTCTATTGTGCCCCTCCAACCAGACGTTACTGCTGTTGCAAGTGCTCTTGCCTCCTTATCTGA GGTATGCCCCCAACTGGGTTATCAATCAACCAACAGTCAGAATGTATGGAAGCTTGACAATCAAACTACTGATCCTACAAGCTCAGATTTCAACCTCAGG TGGGTTGAAAATGTGAGCACTCAGCAAAGTTCAGTTGATAATATCTACCTTAATGGCACGATGAATAATGTGGAAAGTTCAAGGGTTGATCAGTGTAGTT CTCAGTTTCCTGGTAGTTTCCAACAACCTTACCAGGATGATAACTATGGTATATGGAGCTCGGGGCAATCTATTCATAATCCAGCAGAATGTGTACCTTC AGATGTTGGTATATTTTCCCCTGAACCTGCTGTATTAGACGCAGGTGGACTTGGTAACTACTTTGAAACTTCCTGGAGTGGCTCGACAAGCTTTCCGCCA TAG
AA sequence Show only first row Show all	>Lus10014249 pacid=23164720 polypeptide=Lus10014249 locus=Lus10014249.g ID=Lus10014249.BGIv1.0 annot-version=v1.0 MPMDLSPLIFDISSDEETPAFNDLSGGDDDHNWLSEILQKVNQETDDSDDVVVVGEYNPSKPKVLTSKSSEPLKNFEDDDCVILDGDPDKPAEATENNAA DDEDDVLVVGETGQVACRDYPHSRHLCLKFQFSSTLHTEHCSLCHCYVCDSPAPCANWGTGLSSTDHCHATDKQQSWKTMRENSRRDKDSSVTVSSAPNS LQKAVTQLNEIVHFENIIQLTSNMEAHTQVTRPTTVRACSTFGALPNIISRSRAPQRGYFPRIPQPVLGARHKNMLRRARSQNDNFSRQFISDAMMKNKT FDVGFMTNEAQYGTSNNMNNVSGAAYARNLIPFEQQNAVPEMVNMSSIVPLQPDVTAVASALASLSEVCPQLGYQSTNSQNVWKLDNQTTDPTSSDFNLR WVENVSTQQSSVDNIYLNGTMNNVESSRVDQCSSQFPGSFQQPYQDDNYGIWSSGQSIHNPAECVPSDVGIFSPEPAVLDAGGLGNYFETSWSGSTSFPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20310		RIN13	RPM1 interacting protein 13 (....		Lus10014249 [exp]	0	1
AT3G05670			RING/U-box protein (.1)		Lus10013501 [exp]	5.7	0.7508
AT1G58220	MYB		Homeodomain-like superfamily p...		Lus10042871 [exp]	8.8	0.7329
AT2G24530			unknown protein		Lus10026942 [exp]	14.2	0.7693
AT5G44150			unknown protein		Lus10039868 [exp]	18.5	0.6790
AT5G44150			unknown protein		Lus10018632 [exp]	24.3	0.7382
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10024723 [exp]	32.2	0.6709
AT2G33835	C3HZnF	FES1	FRIGIDA-ESSENTIAL 1, Zinc fing...		Lus10015319 [exp]	46.5	0.6960
AT1G74120			Mitochondrial transcription te...		Lus10021146 [exp]	68.0	0.6869
AT5G55040			DNA-binding bromodomain-contai...		Lus10032629 [exp]	75.2	0.6841
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10043012 [exp]	85.5	0.6262

Compare expression of checked genes

Lus10014249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.