Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04130 391 / 2e-135 TPR2, AtTPR2 tetratricopeptide repeat 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G56440 59 / 3e-09 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G62740 50 / 2e-06 Hop2 Hop2, stress-inducible protein, putative (.1) AT1G04190 49 / 2e-06 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G12400 45 / 6e-05 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G12270 42 / 0.0005 Hop1 Hop1, stress-inducible protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025945 [exp] 628 / 0 AT1G04130 425 / 9e-149 tetratricopeptide repeat 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032234 [exp] 50 / 3e-06 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10024597 [exp] 48 / 1e-05 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10010915 [exp] 47 / 1e-05 AT1G56440 412 / 2e-141 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004336 [exp] 47 / 2e-05 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10021905 [exp] 45 / 5e-05 AT1G04190 515 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028919 [exp] 45 / 6e-05 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10006559 [exp] 44 / 0.0001 AT3G04710 581 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10041189 [exp] 44 / 0.0002 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G255300 [exp] 457 / 3e-161 AT1G04130 470 / 5e-167 tetratricopeptide repeat 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G008400 [exp] 47 / 1e-05 AT1G56440 471 / 1e-163 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G014100 [exp] 47 / 1e-05 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G119500 [exp] 47 / 2e-05 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.003G113400 [exp] 45 / 8e-05 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.008G156500 [exp] 44 / 8e-05 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G071100 [exp] 43 / 0.0002 AT4G11260 385 / 1e-133 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Potri.010G082900 [exp] 43 / 0.0003 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G149800 [exp] 42 / 0.0007 AT4G11260 419 / 1e-146 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014250 pacid=23164724 polypeptide=Lus10014250 locus=Lus10014250.g ID=Lus10014250.BGIv1.0 annot-version=v1.0 ATGGCGTTGTTGATGGTTAAAGAATCCGAACCCACCACCGAGTCGGAGATTTTTTACTTCGACGCAATCTCCGCTCTCAAACAGTCTTCTGCTATCGAGC TCAAGGAGGAAGGTAACAAGTATGTCAAGATGGGAAAGAAGCATTTTTCTGATGCGATTGACTGCTACACTAGGGCAATCAACCAGAAAGCCCTAACTGA TTCAGACACCTCTCTTCTTTACTCCAATAGAGCTCATGTTAATATGCTTCTTGGAAACTATAGACGCTCTTTGACAGATGCTGAAGAAGCAATTACGCTT TCCCCCAGCAATGTGAAGGTAGGCATTTTATCGTGCCGCCAAAGCATTTTGTCTTTAAATCTGTTGAGCGAGGCAAAATCATTTGGCGAGAAAGGACTAG AGCTAGATTCAAGTAATGTAGAGCTGGATAAACTAGTTAGGCAGATAGGTGATCTGAAGTTGCAACGGGATAATCTGGAGGCTGAAGTCAACAATGCTGT AGCACAAGCTAAGGAACTTGTTTCTGCTTTCGAAACCAGAGGATTAAAGATGGGAGTTGCTATATATCGAGAACTCACTGGATTGAGGAAACCTCTATTA GATAAGAATAAACTTCTGCATTGGCCAGTTCTTCTTCTCTATGCCGAGGTTATGTCCAGCGACTTCATCGAAGACTTCTGCGAGATAGACATGTTCTCCA CCCATCTTGATATGATATCCTTTCCTGAAACGGAAAGTTATCCACCCTTGGATTGGGATACAGAAAATAACTACACTCGCGAAGCTATTGAGCTATATTA TGAGGCAGGTTCTGGGGGTCGTCTTCCGAAGACTAAAGTGCTTAAATACCTGCTAGAAGGAACTGCAGGTGCTAATCTAGAGAGTGAAAAAGACGAGAAG GATTCAACTGAGATTGTCTCGGGAGGAAAAACCCATAGCAGGTGGGTCAAAGTGAATGAAAAGAGAAAGCTTATTGATGTGATGAAAGAAGCTGACTTTA TCATCCCAGGAATCCCAGGTCAGCTTCAGCTTGCACCTCAATCTTCTATGTTGTTTCGAAGAGCTCCAAATTTTACGAGACGTTCAGATCTGGGAAATGG AAACTTCCCTGATATGAGCTATGGGATGAATTCGGCAAAAATGGTGATTTACAAGCAGCATCAGTGA
AA sequence Show only first row Show all	>Lus10014250 pacid=23164724 polypeptide=Lus10014250 locus=Lus10014250.g ID=Lus10014250.BGIv1.0 annot-version=v1.0 MALLMVKESEPTTESEIFYFDAISALKQSSAIELKEEGNKYVKMGKKHFSDAIDCYTRAINQKALTDSDTSLLYSNRAHVNMLLGNYRRSLTDAEEAITL SPSNVKVGILSCRQSILSLNLLSEAKSFGEKGLELDSSNVELDKLVRQIGDLKLQRDNLEAEVNNAVAQAKELVSAFETRGLKMGVAIYRELTGLRKPLL DKNKLLHWPVLLLYAEVMSSDFIEDFCEIDMFSTHLDMISFPETESYPPLDWDTENNYTREAIELYYEAGSGGRLPKTKVLKYLLEGTAGANLESEKDEK DSTEIVSGGKTHSRWVKVNEKRKLIDVMKEADFIIPGIPGQLQLAPQSSMLFRRAPNFTRRSDLGNGNFPDMSYGMNSAKMVIYKQHQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04130		TPR2, AtTPR2	tetratricopeptide repeat 2, Te...		Lus10014250 [exp]	0	1
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Lus10035100 [exp]	9.6	0.8378
AT5G67530		ATPUB49	plant U-box 49 (.1)		Lus10004731 [exp]	16.6	0.8610
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10010290 [exp]	20.9	0.8738
AT2G45240		MAP1A	methionine aminopeptidase 1A (...		Lus10021657 [exp]	21.4	0.8717
AT2G46700		ATCRK3	CDPK-related kinase 3 (.1.2)		Lus10009078 [exp]	32.6	0.8450
AT3G51980			ARM repeat superfamily protein...		Lus10023269 [exp]	36.2	0.8682
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10000360 [exp]	37.7	0.8574
AT4G09890			Protein of unknown function (D...		Lus10020842 [exp]	37.9	0.8637
					Lus10005241 [exp]	43.8	0.8427
AT4G23050			PAS domain-containing protein ...		Lus10024502 [exp]	54.6	0.8189

Compare expression of checked genes

Lus10014250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.