Plant FIBer expression Database

Lus10014251 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G10700 489 / 2e-171 GalAK galacturonic acid kinase (.1)
AT3G06580 52 / 8e-07 GAL1, GALK GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025946
[exp]
774 / 0 AT3G10700 532 / 0.0 galacturonic acid kinase (.1)
Lus10016320
[exp]
50 / 1e-06 AT3G06580 496 / 6e-176 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
Lus10017072
[exp]
46 / 5e-05 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
Lus10037789
[exp]
45 / 9e-05 AT3G06580 765 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
Lus10002740
[exp]
44 / 0.0002 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G070500
[exp]
538 / 0 AT3G10700 555 / 0.0 galacturonic acid kinase (.1)
Potri.008G102800
[exp]
52 / 9e-07 AT3G06580 793 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
Potri.010G148100
[exp]
50 / 2e-06 AT3G06580 792 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0677 GHMP_C PF08544 GHMP_kinases_C GHMP kinases C terminal
CL0329 S5 PF00288 GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence
>Lus10014251 pacid=23164701 polypeptide=Lus10014251 locus=Lus10014251.g ID=Lus10014251.BGIv1.0 annot-version=v1.0
ATGGCTGAAGCTTCTTGGCCTAGTGAAGCTGAGGTGAATCAAATCAGGAATGTGGTTTCTTCAATTTCCGGGAGTGACCCTAGTGAAGTTAGAGTTGTGG
TCTCTCCTTACCGTATATGTCCCCTGGGTGCTCATATCGATCACCAGGGTGGATCTGTTACAGCTATGACGATTAACCGGGGTATACTGCTGGGTTTTGT
TCCCTCCCTTGATACAAAGGTTGTGTTACGTTCAGGACAGTTTGAAGGCGAAGTTCGTTTCAGCCTGGAGAAGCACGTCTTCTGTCCAGAATCCAATTTA
GTATTGTTTTCTAGCCATTCACTAAGAAGTGTTGATGAAATTCAGCATCCACTTCACAGTAGTAAACAATATGCAAACCATACAACTGATTCGTCAAATC
ATCAGGACGATAGTCAATGGGGAAAGTTTGCAAGGGGAGCTGTCTTTGCCATGCAGAAGACAGGATATTCTCTTACAAGGGGAGTTACTGGATTTATATA
TGGGTCTGAGGGCCTTGATAGTGCAGGACTTAGCTCTTCAGCTGCTGCTGGAGTTGCTTATCTGCTGGCCTTTGAGAGTGCAAACAACTTAACCATGTCC
CAGGTGCAAAATATTGAATTTGACAGGCTGATTGAGAACGAATATTTGGGTCTGAAAAACGGCATATTGGACCAGTCAGCAATATTGCTGTCAAGCCGTG
GCTGCTTAACTTACATGAACTGCACGACCAAAGAACACAAGATTGTACGCCCTTTCAAATCGCAGATAGATGGTCAAAGTGATTTGCAGAAATCATTCAA
GATACTGGTTGCATTTTCAGGCTTAAGGGAAGCCTTGACCAGTGGCTCTGGTTACAACCGCCGAGTTTCAGAATGTCAAGAGGCTGCAAGGGTTCTACTC
AAGTATGATCCCTTGCTAACCTGCTGGAACATTAGTATGTATGGACTTACAATGAATGTTATAACAGTAGTTGAACAAAAGGCATATGAAATGCACAAGG
ACAAGTTAGAAGGTGATCTAGCCAAACGAGTAGAGCATTATTTCTCAGAAAATATGCGGGTAAATGAAGGAATTGAAGCTTGGACCTCGGGCGATTTGGA
AGAGTTCGGAAAGCTTATTTCGGCATCTGGCTTAAGCTCCATAAAGAACTACGAATGCGGTTGCGAGCCACTGATACAACTGTACGAGATAGTGGTGAAG
GCGCCTGGAGTTTACGGAGGAAGGTTCAGTGGTGCTGGCTTCAGAGGATGCTGCATTGCCCTTGTTCGTCCTCATTTGGCTGATGAAGCTGCTGCTTTCG
TGAAATCAGAATACTCCAAAGCACAGCCTAAACTTGCTTCCCAACTCAACCCGAGCGCCGCAGTTTTGATCTGTGAACCAGCCGACTCTGCTCGTATCAT
CATGAACCCTTCCTTTGCTGCAACATAA
AA sequence
>Lus10014251 pacid=23164701 polypeptide=Lus10014251 locus=Lus10014251.g ID=Lus10014251.BGIv1.0 annot-version=v1.0
MAEASWPSEAEVNQIRNVVSSISGSDPSEVRVVVSPYRICPLGAHIDHQGGSVTAMTINRGILLGFVPSLDTKVVLRSGQFEGEVRFSLEKHVFCPESNL
VLFSSHSLRSVDEIQHPLHSSKQYANHTTDSSNHQDDSQWGKFARGAVFAMQKTGYSLTRGVTGFIYGSEGLDSAGLSSSAAAGVAYLLAFESANNLTMS
QVQNIEFDRLIENEYLGLKNGILDQSAILLSSRGCLTYMNCTTKEHKIVRPFKSQIDGQSDLQKSFKILVAFSGLREALTSGSGYNRRVSECQEAARVLL
KYDPLLTCWNISMYGLTMNVITVVEQKAYEMHKDKLEGDLAKRVEHYFSENMRVNEGIEAWTSGDLEEFGKLISASGLSSIKNYECGCEPLIQLYEIVVK
APGVYGGRFSGAGFRGCCIALVRPHLADEAAAFVKSEYSKAQPKLASQLNPSAAVLICEPADSARIIMNPSFAAT

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G10700 GalAK galacturonic acid kinase (.1) Lus10014251
[exp]
0 1
AT3G10700 GalAK galacturonic acid kinase (.1) Lus10025946
[exp]
3.7 0.9131
AT1G64110 DAA1 DUO1-activated ATPase 1, P-loo... Lus10028752
[exp]
6.0 0.9015
AT5G45370 nodulin MtN21 /EamA-like trans... Lus10035693
[exp]
6.1 0.9174
AT1G13180 ATARP3, DIS1 DISTORTED TRICHOMES 1, ARABIDO... Lus10006238
[exp]
8.4 0.8869
AT5G01890 Leucine-rich receptor-like pro... Lus10022738
[exp]
11.6 0.8937
AT2G01070 Lung seven transmembrane recep... Lus10036166
[exp]
17.7 0.8755
AT3G08550 ABI8, ELD1, KOB... KOBITO, ABA INSENSITIVE 8, elo... Lus10024181
[exp]
22.4 0.8676
AT1G68260 Thioesterase superfamily prote... Lus10031959
[exp]
23.5 0.8811
AT1G79820 SGB1 SUPPRESSOR OF G PROTEIN BETA1,... Lus10025800
[exp]
23.5 0.8760
AT3G55990 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29... Lus10007497
[exp]
24.0 0.8946

Lus10014251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.