Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025948 [exp] 70 / 4e-15 AT2G43610 50 / 3e-07 Chitinase family protein (.1) Lus10020253 [exp] 38 / 0.0006 AT2G43610 54 / 4e-09 Chitinase family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00187 [flax] [poplar] Chitin_bind_1 Chitin recognition protein
Representative CDS sequence Show only first row Show all	>Lus10014253 pacid=23164712 polypeptide=Lus10014253 locus=Lus10014253.g ID=Lus10014253.BGIv1.0 annot-version=v1.0 ATGAATAGCCACGTGCCTCCTCCAATGCAGAGTCACGTGCCGCCTCCAAAGCCGAGCCATGTTCCGTCGCCGGTTGAAAGCCCGCCGCCTTGTTCATGTC AGGACTCGACGACCACTTCTTCGTGGGCTCACACCGCCGGCGACGACAAATACAACAGGCCTAGTTGCGGCAAGGAGGGCCACCATGGAATATGCAAGGA CGACCTTTGTTGCAGTAAGTACAGCTTTTGCGGACATACTGATAAATATTGTGGCGCCGGATGTCAACATGGTTACGGCAAATGCGGTGGAGGAGGAGGC GGCGGTGGCGGAGGAGGTGGGGGCCACCATAGTCCTCCTCCTGCACCCGATGACGATAGTCCTCCTCCTTCTCCTTGTACTTGCGACTAA
AA sequence Show only first row Show all	>Lus10014253 pacid=23164712 polypeptide=Lus10014253 locus=Lus10014253.g ID=Lus10014253.BGIv1.0 annot-version=v1.0 MNSHVPPPMQSHVPPPKPSHVPSPVESPPPCSCQDSTTTSSWAHTAGDDKYNRPSCGKEGHHGICKDDLCCSKYSFCGHTDKYCGAGCQHGYGKCGGGGG GGGGGGGGHHSPPPAPDDDSPPPSPCTCD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43570		CHI	"chitinase, putative", chitina...		Lus10014253 [exp]	0	1
AT1G48820			Terpenoid cyclases/Protein pre...		Lus10008613 [exp]	14.6	0.7140
AT1G31720			Protein of unknown function (D...		Lus10034746 [exp]	14.8	0.7257
AT2G15220			Plant basic secretory protein ...		Lus10019804 [exp]	23.9	0.7014
AT3G19950			RING/U-box superfamily protein...		Lus10033682 [exp]	28.1	0.6611
AT1G60630			Leucine-rich repeat protein ki...		Lus10019429 [exp]	43.4	0.6189
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10023621 [exp]	44.4	0.6300
AT4G14746			unknown protein		Lus10025761 [exp]	45.5	0.5662
AT3G03770			Leucine-rich repeat protein ki...		Lus10010648 [exp]	48.6	0.5587
AT5G44700		GSO2, EDA23	GASSHO 2, EMBRYO SAC DEVELOPME...		Lus10039958 [exp]	61.8	0.5754
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10027305 [exp]	68.1	0.5518

Compare expression of checked genes

Lus10014253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.