Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35890 215 / 2e-64 winged-helix DNA-binding transcription factor family protein (.1) AT5G66100 156 / 8e-43 winged-helix DNA-binding transcription factor family protein (.1) AT5G21160 90 / 4e-19 LA RNA-binding protein (.1.2.3) AT2G43970 57 / 1e-08 RNA-binding protein (.1.2) AT3G19090 53 / 2e-07 RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025951 [exp] 684 / 0 AT4G35890 264 / 4e-82 winged-helix DNA-binding transcription factor family protein (.1) Lus10025953 [exp] 639 / 0 AT4G35890 226 / 8e-69 winged-helix DNA-binding transcription factor family protein (.1) Lus10014255 [exp] 190 / 6e-57 AT4G35890 91 / 5e-20 winged-helix DNA-binding transcription factor family protein (.1) Lus10025954 [exp] 117 / 4e-32 ND 43 / 7e-06 Lus10025952 [exp] 92 / 1e-21 AT4G35890 54 / 8e-09 winged-helix DNA-binding transcription factor family protein (.1) Lus10041277 [exp] 94 / 4e-20 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10037431 [exp] 79 / 4e-15 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3) Lus10038494 [exp] 62 / 2e-10 AT5G46250 323 / 5e-108 RNA-binding protein (.1.2.3) Lus10023315 [exp] 62 / 2e-10 AT5G46250 331 / 4e-111 RNA-binding protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G063600 [exp] 332 / 4e-109 AT4G35890 165 / 1e-44 winged-helix DNA-binding transcription factor family protein (.1) Potri.005G109400 [exp] 322 / 3e-105 AT4G35890 178 / 2e-49 winged-helix DNA-binding transcription factor family protein (.1) Potri.005G243600 [exp] 135 / 7e-35 AT5G66100 109 / 1e-25 winged-helix DNA-binding transcription factor family protein (.1) Potri.009G018100 [exp] 110 / 9e-26 AT5G21160 660 / 0.0 LA RNA-binding protein (.1.2.3) Potri.001G220100 [exp] 108 / 3e-25 AT5G21160 607 / 0.0 LA RNA-binding protein (.1.2.3) Potri.011G080700 [exp] 69 / 2e-12 AT5G46250 325 / 5e-109 RNA-binding protein (.1.2.3) Potri.017G007400 [exp] 62 / 3e-10 AT2G43970 306 / 2e-98 RNA-binding protein (.1.2) Potri.007G144800 [exp] 62 / 3e-10 AT2G43970 357 / 2e-117 RNA-binding protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF05383 [flax] [poplar] La La domain
Representative CDS sequence Show only first row Show all	>Lus10014254 pacid=23164729 polypeptide=Lus10014254 locus=Lus10014254.g ID=Lus10014254.BGIv1.0 annot-version=v1.0 ATGGGATCGGTTTCCTCCGATGAAGAGATCTCCAATGGCAATGCTGGTAAGAGGCCAGTTTGGAATATGCCGTCTAATGGTGCTTTAGAGATTGGACCTG TTATGGGAGCTGTTGCCTGGCCTGCTTTATCCGAGGCCGCTAGGGTTTCCTCTAAATCTCCTCAGCCCGACGGATCATCTACCCTGCCTTTGTCGTCGGG AAGTGGAACTGCATCTTCCTCTCCTAGGAAACAGGTCAATAATGCAACCCCTAACTCAACACCAAATCATACAGCTCCAGCTCGCCAAAGATCATTTAAT AAGCAGCGGAATGGTGCATCCTCTTCGGATGCTAGCTCTCCTCAGCCAATAGCATCGCAGGGGCATGCAGGGGAGGGTCATTTGAATAACCCTTCTCCGA GGGATCATACCCAAAGAAGCTCTCAATCCCGCAACTCTAGTGATCATTCAGGGCAGCAGCGCAATACATTTAGAAACCGTAATGGCGGGACACATCCTCG GGCGGACGGCTCTTATAATCATAATTATGGAGGTAGGCGTGATCATGATCGTGGAAATCAGGATTGGAATTCTCATAGGAATTTCAATGGGAGGGATGGG CATGTGCAACCACAGAGAGTTGCACCGAGGTTCATGAGGCACCAACCTCCTCCTCCGCCACCTCCTGCTTCTACACCTTTCATAGCAGCTCCACCCGTCA GGGCGTTCGGTAGTCCCATGGGTTTCCCTGAATTGGCTTCTCCTATGTACTATGTTGCACAACCTCCACCAAATATGAGAGGAATGCCCTTTCTGGCTGC ACCAATGCCACCTCATGCCGTGTTTTTTCCACCACCAGACTTCCAGTTGCATTCCAAAATAGTGACTCAGATAGATTACTATTTTAGCAATGACAATTTG ATCCGTGACACCTATTTGCGACAGAATATGGATGATCAGGGCTGGGTACCCATTAACTTAATTGCAGGCTTCAAAAAAGTTTCACAACTTACAGATAGTA TTCCACTGATATTGGATGCTTTAAGGAATTCTTCCATTGTGGTGGAAGTACAGGGTGACAAAGTAAGACGGAGGACCGACTGGATGAGGTGGTTGTTGAA GCCATCTCAGGTCCCAAGTGTGACAAGCTCTCAGGGAGTCGGCGAGTCCAGCAGCCAAGACACCATTTCAGATAATTTGCAGAACATGTATTTGGAAGAC AAGGTTACTGGGTCTGGGCAGAGCCAAAGTACATCTATATCTGGTGATTTTAATAGCAATGAAGAAGGCACAAGTCGAGTTGGTCATGATGGAGATTTGG ATGGATAA
AA sequence Show only first row Show all	>Lus10014254 pacid=23164729 polypeptide=Lus10014254 locus=Lus10014254.g ID=Lus10014254.BGIv1.0 annot-version=v1.0 MGSVSSDEEISNGNAGKRPVWNMPSNGALEIGPVMGAVAWPALSEAARVSSKSPQPDGSSTLPLSSGSGTASSSPRKQVNNATPNSTPNHTAPARQRSFN KQRNGASSSDASSPQPIASQGHAGEGHLNNPSPRDHTQRSSQSRNSSDHSGQQRNTFRNRNGGTHPRADGSYNHNYGGRRDHDRGNQDWNSHRNFNGRDG HVQPQRVAPRFMRHQPPPPPPPASTPFIAAPPVRAFGSPMGFPELASPMYYVAQPPPNMRGMPFLAAPMPPHAVFFPPPDFQLHSKIVTQIDYYFSNDNL IRDTYLRQNMDDQGWVPINLIAGFKKVSQLTDSIPLILDALRNSSIVVEVQGDKVRRRTDWMRWLLKPSQVPSVTSSQGVGESSSQDTISDNLQNMYLED KVTGSGQSQSTSISGDFNSNEEGTSRVGHDGDLDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35890			winged-helix DNA-binding trans...		Lus10014254 [exp]	0	1
AT3G02320			N2,N2-dimethylguanosine tRNA m...		Lus10020290 [exp]	1.4	0.9560
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10042000 [exp]	3.6	0.9571
AT4G35890			winged-helix DNA-binding trans...		Lus10025951 [exp]	4.0	0.9377
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10013680 [exp]	6.9	0.9556
AT2G42520			P-loop containing nucleoside t...		Lus10015977 [exp]	8.2	0.9156
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10041519 [exp]	8.8	0.9472
AT2G01720			Ribophorin I (.1)		Lus10040410 [exp]	8.9	0.9510
AT3G59820			LETM1-like protein (.1.2)		Lus10027069 [exp]	11.0	0.9395
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10018003 [exp]	11.2	0.9489
AT4G21520			Transducin/WD40 repeat-like su...		Lus10011253 [exp]	12.2	0.9334

Compare expression of checked genes

Lus10014254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.