Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35890 66 / 9e-12 winged-helix DNA-binding transcription factor family protein (.1) AT5G66100 52 / 4e-07 winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025953 [exp] 178 / 2e-52 AT4G35890 226 / 8e-69 winged-helix DNA-binding transcription factor family protein (.1) Lus10025951 [exp] 178 / 8e-52 AT4G35890 264 / 4e-82 winged-helix DNA-binding transcription factor family protein (.1) Lus10014254 [exp] 169 / 7e-49 AT4G35890 246 / 6e-76 winged-helix DNA-binding transcription factor family protein (.1) Lus10025952 [exp] 75 / 3e-16 AT4G35890 54 / 8e-09 winged-helix DNA-binding transcription factor family protein (.1) Lus10017078 [exp] 62 / 4e-11 AT5G49525 57 / 3e-12 unknown protein Lus10035750 [exp] 62 / 1e-10 AT1G51640 177 / 4e-51 exocyst subunit exo70 family protein G2 (.1) Lus10025720 [exp] 44 / 3e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G063600 [exp] 108 / 4e-26 AT4G35890 165 / 1e-44 winged-helix DNA-binding transcription factor family protein (.1) Potri.005G109400 [exp] 101 / 8e-24 AT4G35890 178 / 2e-49 winged-helix DNA-binding transcription factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014255 pacid=23164734 polypeptide=Lus10014255 locus=Lus10014255.g ID=Lus10014255.BGIv1.0 annot-version=v1.0 ATGGCTGGAACTGGAACATCAACTTCCTCTCCTCGGAAACAGGTCAACAATGCAATTCCTAACCCAACCCAAAACATTGCCGTGTCAGTGCGCCAAAAAT CGTTTAATAAGCATAATGGTCCATCTTCTTCCGATGGTAGCTCTCCTCAGCCAGCAGCATCACAAGGGCATGCAGCCGAGTTTCATCCGAATAACCCTTC TCCAAGGGATCATACCCAGAGAAGCACTCAGTCACGCAACTCTAGTGATCATTCAGGGCAGCAACACAGTTCATTTAGAAATCGTAATGGTGGGACACAT CCTCAGGTAAATGGCTCTAATTATGGGGGTAGGCGTGATCATGATCGTGGGAATCTGGATTGGAATTCTCATAGGAATTTCAATGGCAGGGACGGGCATG TGCAACCACAGAGAATAGGGCCGAGGTTCATGAGGCACCCACCTCCACCACCTCCTGCTTCTACACCTTTCATAGCATCCCCACCGGTGCGGGCTTTTGG TAGTCCCATGGGTTTCCCTGGTGACAGAGTTGCACCACTTATTGTCGGACCCAGCTCCTTCTATGGTTTAAACAAGCTTGGCTCCTTTTTCCCTGCCTTC CTTGATCCCCCTGCTTCCTCAAGATTTAAGGTCAATGTGGACGATACAATATGGCGAGGATCCGGAGGGGCGGCGGGATGGGTTCTCTGGGATGCGATGG GGACGGTGCTCCATGCAGTGGGCAAGCCCTATCCTGGTGACTTTGAGGGAGATGCAGAAGGAGTGGCGACTCAGATTCGAGTTAGGCACTTTAGGTTGGC GGTTGGCGGTTTTGTTGCCGTAGAGATTTGTCAGCTTCTCTCCTCCTTGCCAAAGGCCCGCCTCCTAATTGTTCGATGGTCAGAGCTTGTGGCGGTCGTG TTGGCCGGTGGTGGTGTAGTCGTGTGTTATCAGGACGAGCGTCGACCTCAGGCGAAGATCTGA
AA sequence Show only first row Show all	>Lus10014255 pacid=23164734 polypeptide=Lus10014255 locus=Lus10014255.g ID=Lus10014255.BGIv1.0 annot-version=v1.0 MAGTGTSTSSPRKQVNNAIPNPTQNIAVSVRQKSFNKHNGPSSSDGSSPQPAASQGHAAEFHPNNPSPRDHTQRSTQSRNSSDHSGQQHSSFRNRNGGTH PQVNGSNYGGRRDHDRGNLDWNSHRNFNGRDGHVQPQRIGPRFMRHPPPPPPASTPFIASPPVRAFGSPMGFPGDRVAPLIVGPSSFYGLNKLGSFFPAF LDPPASSRFKVNVDDTIWRGSGGAAGWVLWDAMGTVLHAVGKPYPGDFEGDAEGVATQIRVRHFRLAVGGFVAVEICQLLSSLPKARLLIVRWSELVAVV LAGGGVVVCYQDERRPQAKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35890			winged-helix DNA-binding trans...		Lus10014255 [exp]	0	1
AT3G06880			Transducin/WD40 repeat-like su...		Lus10036201 [exp]	10.5	0.7967
AT1G35420			alpha/beta-Hydrolases superfam...		Lus10016930 [exp]	12.7	0.8387
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10019224 [exp]	23.0	0.8042
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10018210 [exp]	23.5	0.7767
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10030404 [exp]	25.8	0.7803
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10004292 [exp]	31.4	0.7891
AT4G21870			HSP20-like chaperones superfam...		Lus10007666 [exp]	48.4	0.7032
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10001560 [exp]	49.7	0.7754
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10011683 [exp]	51.1	0.7536
AT1G54570			Esterase/lipase/thioesterase f...		Lus10033848 [exp]	53.4	0.7136

Compare expression of checked genes

Lus10014255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.