Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20132 282 / 3e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 273 / 3e-85 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 269 / 2e-84 SGNH hydrolase-type esterase superfamily protein (.1) AT1G75900 267 / 1e-83 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75890 267 / 1e-83 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G75880 267 / 2e-83 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G06990 260 / 4e-81 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20130 261 / 2e-79 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT3G16370 254 / 8e-79 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025958 [exp] 522 / 0 AT2G24960 102 / 4e-24 unknown protein Lus10028424 [exp] 439 / 1e-150 AT3G14820 298 / 2e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028423 [exp] 428 / 3e-146 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028425 [exp] 439 / 4e-146 AT1G75900 333 / 8e-109 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041877 [exp] 427 / 8e-146 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025957 [exp] 358 / 1e-120 AT1G06990 158 / 2e-46 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10020010 [exp] 374 / 2e-120 AT2G19080 308 / 1e-99 metaxin-related (.1) Lus10003717 [exp] 293 / 2e-93 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 292 / 3e-93 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018800 [exp] 302 / 1e-96 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 294 / 5e-94 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 263 / 8e-82 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 261 / 2e-81 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 255 / 5e-79 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 248 / 1e-76 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G061900 [exp] 246 / 2e-75 AT5G45960 405 / 4e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 244 / 4e-75 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160100 [exp] 241 / 1e-73 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 238 / 1e-72 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10014257 pacid=23164731 polypeptide=Lus10014257 locus=Lus10014257.g ID=Lus10014257.BGIv1.0 annot-version=v1.0 ATGACGACACCTAACCGTGTAACTCGATACGGGAGAGAATCACGAGCAGTTCAGGAGGATGACCAGCAGCAACCCTCTCGGGCCAGGTGGACAAATGACC TTACCAAGATAGTGGCGGAGTTGATGGTGGACGAAGTTCAACGAGGGAACAGAACCAGAACTTCTTTCAGGAAGCAAGCTTGGGAGTCCATAACCCAACA ATTCCACCAGAAAACGGGTCTGAAATGGGGTGAACAGCAACTCAAGAGTAAACACATCCTCATGAAGAAGCAGTACGCCATTGTTAAGCCACTCCTGGAT CATACTGGCTTCCGCTTTGATGAATCCACCGGCACTGTTGTAGCTGCCAATGATGATGCTTGGGCCGACTACCTTAAGGAGCACCCGGATGCTGAGCAGA TAAGAAACAATGGTTGCCCATTCTACAATCAACTGTGCTTGATATTCTCCAGCCCCGTGGTATCATCTAATGGAAGACACAGTCAGGAGTCTTCCTTTGA GCATCAGCCTCCAGATGTTGTAAAGGAGGACGAAGAGTTGTCGTCGGCATCAGAGGAAACGGAAGAGACAGGTGATCAACCCTATACCAACAGAACGATT CGACCTACTGCAGCTCGTAGTAAGAAAAGAGGAAGGAAGGGTATGGATGATGCAATTGCAGCGGGGATGAAGCATATGGCAGCTGCTTCGAGATTGTACA CAACGGTAGCGAATGATGTGGAAAACAAGTATAGTATGGCAGATTGCATTAAAGCTCTGGATGGGATGGAAGGTGTTCTCGACCAAAACGTCTATTGTGC TGCACTCGATCTGTTCAATTTCCGGAACAAGAGGGAATTATTCATGTCCCTTACTGCTGATCGGCGCTTGATCTGGTTGCAGGGGAAACGCTCAATGACA GCAAAACTCAGTAACAGTAACAATAATAATGTTCCAGCTGTATTTGTGTTTGGAGACTCGGTGGTTGATACCGGGAACAACAATTACATCCCCACCATTG GAAGGAGCAACTTCCCACCATACGGCAGAGATTTCCCTTCTCAAATAGCAACGGGACGCTTCAGCAATGGCAGATGCATCTCTGACTTCTTAGCTGAATT TTTTAAAGTGAAACCACTGCTTCCACCTTATCTGGATCCAAACTTGGAGCTGCCAGAACTCCTTACTGGAGTCTGTTTCGCTTCAGCCGGTGCTGGTTTC GACCCTCGAACATCCGAATTCACTAGAGCAATACCGCTCCTGGGCCAGTTGGATTTGCTTCGAGAATACATCAGCAAAGCGAATGCAAGTGTCGGAGAAA CGAAAACATGGTCCATCGTATCTGAAAGTGCATACATAACATTCATGGGAAGCAACGATCTCACCTTGTTCTACCCTATGGTCAGGTCCGAGGTCGACGA GAATTCCTACACTGATATAATGATCCGACATGTCGTAGACTTCCATCAGCAACATTCTAATACCGAGGAGATTGCGAAAAATGAAAACCAGCAATTATAC GCGGTTGGAGCGCGAAAAATTGCAGTGACGAGCGTACCTCCCTCGGGGTGTGTGCCAGCACTGAGAGTTATAGCTTCAGGAGAAGAGAGAAAGTGTGCTG AGATTCTTAATAGACGAATAAGGCTTTTCAACTCCAAACTGTCTTTGGTAGTTGACAGGATGAATGAACAGCTTCCAGAAGCTAGGATTGTGTTCGTTGA CCTCTACTATTCGTTGCTTGCTGTCATTCAAAATCCAGCTCCGTACGGGATTGATGAGGTTATAAGAGGGTGTTGCGCGACGGGGAACATGGAAACGGGG ATACTGTGTGTTATTCCTGGGACTTGCCCTGATGCATCCAGATACTTGTTCTGGGACAGTTTCCATCCCAGTGAAGCAGCTTCCAGGACTCTTACTTATA AGCTCTTCGGCCCTGTTCTGAACAAGCTGCTCTGA
AA sequence Show only first row Show all	>Lus10014257 pacid=23164731 polypeptide=Lus10014257 locus=Lus10014257.g ID=Lus10014257.BGIv1.0 annot-version=v1.0 MTTPNRVTRYGRESRAVQEDDQQQPSRARWTNDLTKIVAELMVDEVQRGNRTRTSFRKQAWESITQQFHQKTGLKWGEQQLKSKHILMKKQYAIVKPLLD HTGFRFDESTGTVVAANDDAWADYLKEHPDAEQIRNNGCPFYNQLCLIFSSPVVSSNGRHSQESSFEHQPPDVVKEDEELSSASEETEETGDQPYTNRTI RPTAARSKKRGRKGMDDAIAAGMKHMAAASRLYTTVANDVENKYSMADCIKALDGMEGVLDQNVYCAALDLFNFRNKRELFMSLTADRRLIWLQGKRSMT AKLSNSNNNNVPAVFVFGDSVVDTGNNNYIPTIGRSNFPPYGRDFPSQIATGRFSNGRCISDFLAEFFKVKPLLPPYLDPNLELPELLTGVCFASAGAGF DPRTSEFTRAIPLLGQLDLLREYISKANASVGETKTWSIVSESAYITFMGSNDLTLFYPMVRSEVDENSYTDIMIRHVVDFHQQHSNTEEIAKNENQQLY AVGARKIAVTSVPPSGCVPALRVIASGEERKCAEILNRRIRLFNSKLSLVVDRMNEQLPEARIVFVDLYYSLLAVIQNPAPYGIDEVIRGCCATGNMETG ILCVIPGTCPDASRYLFWDSFHPSEAASRTLTYKLFGPVLNKLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10014257 [exp]	0	1
AT5G10370			helicase domain-containing pro...		Lus10012749 [exp]	1.0	0.7850
AT5G22480			ZPR1 zinc-finger domain protei...		Lus10015454 [exp]	2.0	0.7520
AT5G41620			unknown protein		Lus10003027 [exp]	3.5	0.7419
AT4G16835			Tetratricopeptide repeat (TPR)...		Lus10000597 [exp]	7.1	0.6728
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10040171 [exp]	22.6	0.6599
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Lus10038717 [exp]	24.3	0.6836
AT1G02290			unknown protein		Lus10018907 [exp]	25.7	0.7103
AT5G64930		HYS1, CPR5	HYPERSENESCENCE 1, CONSTITUTIV...		Lus10016818 [exp]	27.9	0.6895
AT3G19630			Radical SAM superfamily protei...		Lus10020989 [exp]	29.1	0.7260
AT1G01150			Homeodomain-like protein with ...		Lus10042361 [exp]	32.6	0.7038

Compare expression of checked genes

Lus10014257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.