Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17800 358 / 1e-127 ARAC1, ATGP2, ATRAC1, ROP3, AtROP3 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) AT3G51300 358 / 2e-127 ATRAC11, ROP1, ARAC11, ROP1AT, AtROP1 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) AT4G35950 357 / 5e-127 ATRAC6, ATROP5, ARAC6, RAC2, AtROP7 RAC-like 2, RHO-RELATED PROTEIN FROM PLANTS 5, RAC-like 6 (.1) AT4G35020 348 / 1e-123 ROP6, ARAC3, RHO1PS, ATROP6 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) AT1G75840 348 / 1e-123 ATROP4, ATGP3, AT1G75840.1, ARAC5 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) AT1G20090 341 / 7e-121 ROP2, ARAC4, ATROP2, ATRAC4 Arabidopsis RAC-like 4, RHO-related protein from plants 2 (.1) AT5G45970 331 / 9e-117 ATRAC2, ATROP7, ARAC2 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) AT5G62880 312 / 4e-109 ARAC10, ATRAC10, AtROP11 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1) AT3G48040 312 / 4e-109 ROP10, ARAC8, ATROP10, ATRAC8 Arabidopsis RAC-like 8, RHO-related protein from plants 10 (.1) AT4G28950 299 / 6e-104 ATRAC7, ARAC7, ATROP9, ROP9 Arabidopsis RAC-like 7, RHO-related protein from plants 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025959 [exp] 360 / 5e-128 AT2G17800 355 / 2e-126 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Lus10028428 [exp] 344 / 8e-122 AT2G17800 347 / 3e-123 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Lus10033131 [exp] 343 / 1e-121 AT4G35020 361 / 4e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10034538 [exp] 342 / 6e-121 AT4G35020 359 / 2e-128 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10041881 [exp] 339 / 1e-119 AT2G17800 340 / 2e-120 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Lus10014123 [exp] 336 / 2e-118 AT4G35020 354 / 5e-126 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10019786 [exp] 334 / 8e-118 AT4G35020 355 / 1e-126 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10015298 [exp] 327 / 5e-115 AT5G45970 347 / 9e-124 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) Lus10039899 [exp] 315 / 3e-110 AT4G35020 324 / 1e-114 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G110700 [exp] 360 / 2e-128 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Potri.007G061500 [exp] 360 / 2e-128 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Potri.009G134600 [exp] 350 / 3e-124 AT1G75840 353 / 5e-126 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.004G174900 [exp] 348 / 9e-124 AT4G35020 360 / 8e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Potri.002G019500 [exp] 347 / 5e-123 AT1G75840 352 / 1e-125 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.005G242000 [exp] 346 / 9e-123 AT1G75840 359 / 2e-128 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.013G123800 [exp] 331 / 8e-117 AT1G75840 342 / 1e-121 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.019G092300 [exp] 328 / 1e-115 AT1G75840 337 / 9e-120 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.011G061500 [exp] 325 / 1e-114 AT5G45970 344 / 1e-122 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) Potri.015G073000 [exp] 318 / 1e-111 AT5G62880 354 / 7e-126 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10014258 pacid=23164726 polypeptide=Lus10014258 locus=Lus10014258.g ID=Lus10014258.BGIv1.0 annot-version=v1.0 ATGAGCGCATCAAGGTTCATCAAGTGTGTCACCGTGGGTGATGGTGCTGTTGGTAAAACCTGTCTCTTGATTTCTTACACCAGCAACACTTTTCCTACGG ATTACGTGCCTACAGTTTTTGACAATTTCAGTGCAAATGTGGTTGTGAATGGTGCCACTGTCAACTTGGGTTTGTGGGACACTGCTGGGCAAGAGGATTA CAATAGGTTAAGGCCTTTAAGTTACCGTGGTGCAGACGTTTTCATCTTGGCTTTCTCACTCATTAGTAAAGCTAGCTATGAAAATGTTTCCAAGAAGTGG ATTCCAGAGTTGAAACATTATGCACCTGGTGTCCCAATTATTCTAGTCGGAACAAAGCTTGATCTTCGAGATGACAAGCAGTTCTTTATTGACCATCCTG GTGCTGTCCCTATTTCGACAACTCAGGGTGAAGAACTTAGGAAGCTCATTGGGGCACCTTCATATATTGAGTGTAGTGCAAAAACACAAGAGAATGTGAA GGCGGTTTTCGATGCGGCAATTCGGGTTGTGCTTCAACCACCAAAGCAAAAGAAAAAGAAGAACAAAGCCCAGAAAGCCTGTTCTATTTTTTGGTGCGGT GTCCATGAAGCATCAGCTGGTTCTGGTCTTCGTCATCATCACTCTATTGGGATCTTTAGTTGTTTAGAAATTGCCTTTTAA
AA sequence Show only first row Show all	>Lus10014258 pacid=23164726 polypeptide=Lus10014258 locus=Lus10014258.g ID=Lus10014258.BGIv1.0 annot-version=v1.0 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKW IPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTTQGEELRKLIGAPSYIECSAKTQENVKAVFDAAIRVVLQPPKQKKKKNKAQKACSIFWCG VHEASAGSGLRHHHSIGIFSCLEIAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51300		ATRAC11, ROP1, ...	ARABIDOPSIS THALIANA RHO-RELAT...		Lus10014258 [exp]	0	1
AT2G45250			Integral membrane protein hemo...		Lus10003319 [exp]	1.7	0.8773
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10023776 [exp]	9.7	0.8258
AT5G27290			unknown protein		Lus10018966 [exp]	11.7	0.8711
AT3G10540			3-phosphoinositide-dependent p...		Lus10037921 [exp]	14.6	0.8559
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10038305 [exp]	15.3	0.8538
AT3G13690			Protein kinase protein with ad...		Lus10001996 [exp]	20.8	0.8269
AT4G31115			Protein of unknown function (D...		Lus10026864 [exp]	25.6	0.8640
AT4G14605			Mitochondrial transcription te...		Lus10032061 [exp]	26.0	0.8540
AT4G15510			Photosystem II reaction center...		Lus10000352 [exp]	28.0	0.8535
AT1G47740			PPPDE putative thiol peptidase...		Lus10003951 [exp]	28.6	0.8278

Compare expression of checked genes

Lus10014258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.