Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66150 959 / 0 Glycosyl hydrolase family 38 protein (.1) AT5G13980 899 / 0 Glycosyl hydrolase family 38 protein (.1.2.3) AT3G26720 892 / 0 Glycosyl hydrolase family 38 protein (.1.2) AT5G14950 165 / 1e-41 GMII, ATGMII golgi alpha-mannosidase II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025960 [exp] 1679 / 0 AT5G66150 1097 / 0.0 Glycosyl hydrolase family 38 protein (.1) Lus10012578 [exp] 897 / 0 AT3G26720 1405 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10035111 [exp] 808 / 0 AT5G13980 1467 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10036074 [exp] 731 / 0 AT5G13980 1372 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10041516 [exp] 659 / 0 AT5G13980 1347 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10012577 [exp] 474 / 1e-151 AT5G13980 1483 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10039457 [exp] 165 / 1e-41 AT5G14950 1573 / 0.0 golgi alpha-mannosidase II (.1) Lus10015337 [exp] 157 / 7e-39 AT5G14950 1506 / 0.0 golgi alpha-mannosidase II (.1) Lus10014507 [exp] 139 / 3e-33 AT5G14950 1552 / 0.0 golgi alpha-mannosidase II (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G056300 [exp] 1134 / 0 AT5G66150 1428 / 0.0 Glycosyl hydrolase family 38 protein (.1) Potri.012G106500 [exp] 903 / 0 AT5G13980 1437 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.014G143600 [exp] 900 / 0 AT5G13980 1535 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.002G238200 [exp] 860 / 0 AT3G26720 1477 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Potri.001G350400 [exp] 173 / 3e-44 AT5G14950 1678 / 0.0 golgi alpha-mannosidase II (.1) Potri.017G073900 [exp] 164 / 3e-41 AT5G14950 1672 / 0.0 golgi alpha-mannosidase II (.1) Potri.008G117400 [exp] 57 / 3e-08 AT5G14950 470 / 1e-157 golgi alpha-mannosidase II (.1) Potri.012G106401 [exp] 52 / 2e-07 AT5G13980 71 / 1e-10 Glycosyl hydrolase family 38 protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0158 [flax] [poplar] GH_CE PF01074 [flax] [poplar] Glyco_hydro_38N Glycosyl hydrolases family 38 N-terminal domain CL0103 [flax] [poplar] Gal_mutarotase PF07748 [flax] [poplar] Glyco_hydro_38C Glycosyl hydrolases family 38 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014259 pacid=23164692 polypeptide=Lus10014259 locus=Lus10014259.g ID=Lus10014259.BGIv1.0 annot-version=v1.0 ATGAGAAAGCTGACGTGGCCGTTTGTCTCGCTCATCGTCATATCTACTCTGTACGTAACTGTTGTCGACGGCGCTCTTCTCAACTACCATTACGACACAG GAAGTGGGGTTGTGGATGGAAAGCTGAACGTTCATTTGGTTCCTCATTCACACGACGACGTCGGATGGCTGAAGAACATTGATCAATGCTATGTCGGCTC GAATAACAGTATTCAGAATGCGTGCGTTCAGAATGTGCTGGATTCTGTTGTGGCTGCCCTTCTCAAGGATCCCAACAGGAAGTTTGTCTTTGCTGAAATG TGTATATTGGTGGTCAAAATGGGTTCTCATGAAATTTTCTTTTTGACCTTTGGATGCAAAGCTCAGTCCTTTTTCAATCGTTGGTGGGAAGAACAGAGCA AGGAAACACAGGAGATAGTGAGGAAGCTAGATCATGGCGGACAACTCGAATTCGTAAATGGTGGTTGGTGCATGCACGACGAAGCAGCAACGCATTACAT AGACATGATTGATCAGACAACGTTAGGGCATCGGATGATCAAGAACGAGTTCAACACGACACCTCGTGCCGCCTGGCAAATCGATTCATTTGGTCACTCT GCTGTCCAGGCTTACCTCCTTGGCGCTGAGAGTGGATTCGATTCGGTACATTTCGCTACGGTTGATTACCAAGACAGAGCGAAAAGGAAGGCCGACAAGT CTCTGGAAGTTGTGTGGCGTGGCTCCAGAACTTTTGGTTCCTCCTCTCAGGGTTTCCATTTTGAAGTTGGTGATGAGGATGATCAGGGTGTAATTGTCCA GGATGATCCTCGTATTTTCGATTACAATGTGGATCAACGTGTTAAGGAGTTCGTTCTTGCCGCCAAAACACGGGCTAATGTGACGAGGGCGAACCATGTA ATGTGGACGATGGGCGATGATTTCCAGTACCAGTTTGCTGAGTCTTGGTTCAGGCAAATGGACAAGCTCATTCATCATGTCAACAAGGGTGGAGAAATCA ATGTCTTGTACTCCACGCCATCTATCTACACTGATGCCAAAAATGCAGCAAACCAGTCCTGGCCACTCAAAACTGATGATTTCTTCCCATATGCTGATGG AGAAGATGCCTATTGGACCGGCTACTTCACTAGCCGTCCTGGATTCAAGAGATACGCGGAAATGACTGTGAGTGCTGCACTTACATGCTTAGTAAGTAAG AAGACAAGAGGTCAATGTGGATCCCTGGCTAAGACTTCCAGCCAGCTGACTAGGAAGATGCAGTTTAGCCAGACCAAATCACTTTTAGTGCAGTGCCAAT TGTTGAACATCAGTTATTGCGAACCAACGACAGAAGCAGGAAGCGGAAAGCCACTGGTTGTTATTGTGTACAACCCGCTTCGATGGAATCGGACAGATAT CGTGAGAATACCCGCCTACACAGGGAAATCATCCGACCAAGTTCCAAAGAGCTGGCTTGTCTTCCAAGTATCAGTACCTCCACTTGGTTGGAGCACTTAC TTCCTGTCCACGGCACCTGATATTGCGAAAACGAGAAACAGTTACTCAGTCAAGGGCACTGCAGTCGATGATGTCGTTGAAATCGGACCTGGGAATCTAA AGATGTCATTTTCATCAACTTCCGGACAACTCACTCGGATGTATAACAATGTAACCGGGGTTGATGTACCGTTACAACAAAGCTATGTCTGGTATGCATC AAGTACTGAAGCAGCGCAAAGTTCCGGTGCCTACATTTTCCGGCCTGATTCAAACACTCCAAATATTGTTGCAAGAAAAGTCGCCATGGAGGTCATCCGT GGACCAATTGCTGATGAAATTCATCAGCAATTCGGCTCATGGATTTACCAGATTGGTCAGATTCCAACTGATGACGGTGCTGGAAAAGAGGTGGTCTCTC AGTTGACAGCCAACATGGTGACGGATAAAGTGTTCTATACGGATTCTAACGGAAGAGACTTCCTAAAGAGGGTATGCAATGTAAGAAATGACTGGAACCT GTCTGTGAACCAGCCTGTTGCAGGAAACTATTATCCGCTTAACCTTGGAGCCTATATCACGGACCCCAAAGCTGAACTGTCTGTGCTGGTTGATCGTGCC ACTGGTGGAGGCAGCATCAAAGATGGTCAGCTAGAACTTATGCTCCACAGGAGAATTCTACAAGATGACGGCAGAGGTGTGGGTGAGCCTCTTGACGAAC AAGTTCGAGGCAATTACTACCTGAGCATCGACAAGTTAGGAGGCGGAGCAACATGGCGACGCACGACTGGCCAAGAGATCTATTCACCCCTTCTTCTAGC ATTCACTCATGAGGATGACAAGTTATGGAAAGCCACTCACTTGACCACATCAACATTATTGGACAGTGGATATAGCTTGCCCCATAATGTTGCTTTGATC ACTCTAGAGGCAGGGGAGGATGCTACATATTCGTCACTAGCAAAAGTCGAACTGAAGAAGTTGTTTCCTGGGAAACAGATAAAGGGAGTGAAGGAAATGA GTTTATCAGGAAACCAGGAGAAGTCTAATATAAAGAGAATGAGTTGGATAGTTGAAGGAGATAAAGGGAATGAGAGGAAACCTCTTAGAGGAGGACCCTT TGATCCTTCCGCTCAAATTGTTGAGCTTGCTCCCATGGAGATCCGTACATTCTTGCTGACTTTCTCTTGA
AA sequence Show only first row Show all	>Lus10014259 pacid=23164692 polypeptide=Lus10014259 locus=Lus10014259.g ID=Lus10014259.BGIv1.0 annot-version=v1.0 MRKLTWPFVSLIVISTLYVTVVDGALLNYHYDTGSGVVDGKLNVHLVPHSHDDVGWLKNIDQCYVGSNNSIQNACVQNVLDSVVAALLKDPNRKFVFAEM CILVVKMGSHEIFFLTFGCKAQSFFNRWWEEQSKETQEIVRKLDHGGQLEFVNGGWCMHDEAATHYIDMIDQTTLGHRMIKNEFNTTPRAAWQIDSFGHS AVQAYLLGAESGFDSVHFATVDYQDRAKRKADKSLEVVWRGSRTFGSSSQGFHFEVGDEDDQGVIVQDDPRIFDYNVDQRVKEFVLAAKTRANVTRANHV MWTMGDDFQYQFAESWFRQMDKLIHHVNKGGEINVLYSTPSIYTDAKNAANQSWPLKTDDFFPYADGEDAYWTGYFTSRPGFKRYAEMTVSAALTCLVSK KTRGQCGSLAKTSSQLTRKMQFSQTKSLLVQCQLLNISYCEPTTEAGSGKPLVVIVYNPLRWNRTDIVRIPAYTGKSSDQVPKSWLVFQVSVPPLGWSTY FLSTAPDIAKTRNSYSVKGTAVDDVVEIGPGNLKMSFSSTSGQLTRMYNNVTGVDVPLQQSYVWYASSTEAAQSSGAYIFRPDSNTPNIVARKVAMEVIR GPIADEIHQQFGSWIYQIGQIPTDDGAGKEVVSQLTANMVTDKVFYTDSNGRDFLKRVCNVRNDWNLSVNQPVAGNYYPLNLGAYITDPKAELSVLVDRA TGGGSIKDGQLELMLHRRILQDDGRGVGEPLDEQVRGNYYLSIDKLGGGATWRRTTGQEIYSPLLLAFTHEDDKLWKATHLTTSTLLDSGYSLPHNVALI TLEAGEDATYSSLAKVELKKLFPGKQIKGVKEMSLSGNQEKSNIKRMSWIVEGDKGNERKPLRGGPFDPSAQIVELAPMEIRTFLLTFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26720			Glycosyl hydrolase family 38 p...		Lus10014259 [exp]	0	1
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010467 [exp]	9.4	0.6309
AT3G48180			unknown protein		Lus10030823 [exp]	10.2	0.7095
					Lus10031558 [exp]	10.7	0.7156
AT3G57990			unknown protein		Lus10000401 [exp]	16.7	0.6714
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10033172 [exp]	19.6	0.7164
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10013764 [exp]	21.9	0.5486
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10019633 [exp]	23.9	0.6526
					Lus10006063 [exp]	25.0	0.6623
					Lus10012943 [exp]	25.9	0.6910
AT1G52540			Protein kinase superfamily pro...		Lus10001323 [exp]	33.8	0.6469

Compare expression of checked genes

Lus10014259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.