Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11170 794 / 0 DEAD/DEAH box RNA helicase family protein (.1.2) AT5G11200 794 / 0 DEAD/DEAH box RNA helicase family protein (.1.2.3) AT2G45810 266 / 1e-83 DEA(D/H)-box RNA helicase family protein (.1) AT3G61240 261 / 3e-82 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT4G00660 257 / 2e-80 ATRH8 RNAhelicase-like 8 (.1.2) AT1G72730 247 / 2e-77 DEA(D/H)-box RNA helicase family protein (.1) AT3G13920 243 / 3e-76 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT1G54270 236 / 1e-73 EIF4A-2 eif4a-2 (.1.2) AT3G19760 234 / 1e-72 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT1G51380 225 / 1e-69 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025960 [exp] 857 / 0 AT5G66150 1097 / 0.0 Glycosyl hydrolase family 38 protein (.1) Lus10002021 [exp] 814 / 0 AT5G11200 768 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2.3) Lus10002905 [exp] 454 / 3e-157 AT5G11200 423 / 5e-145 DEAD/DEAH box RNA helicase family protein (.1.2.3) Lus10017804 [exp] 262 / 2e-82 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10014783 [exp] 259 / 5e-81 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2) Lus10030377 [exp] 255 / 1e-79 AT4G00660 850 / 0.0 RNAhelicase-like 8 (.1.2) Lus10017407 [exp] 229 / 7e-71 AT3G19760 728 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10010206 [exp] 222 / 6e-68 AT3G19760 717 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10037620 [exp] 217 / 6e-66 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G253100 [exp] 822 / 0 AT5G11170 808 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.018G028600 [exp] 821 / 0 AT5G11170 807 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.002G157500 [exp] 261 / 3e-82 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.014G081100 [exp] 258 / 1e-80 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.005G093900 [exp] 243 / 3e-76 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.001G197900 [exp] 243 / 6e-76 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.018G061050 [exp] 242 / 7e-76 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.006G225700 [exp] 242 / 1e-75 AT3G13920 797 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.007G070000 [exp] 240 / 5e-75 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.003G043700 [exp] 239 / 1e-74 AT3G13920 791 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10014260 pacid=23164658 polypeptide=Lus10014260 locus=Lus10014260.g ID=Lus10014260.BGIv1.0 annot-version=v1.0 ATGGGAGAAACAAGGGACAACGATTACGAGGAGGAGCTTCTCGATTACGAGGAAGAGGAGGAGAAAGCCCCCGACTCTATCACTGCCAAAGTCAACGGCG AAGCCCCTAAGAAGGGATATGTTGGGATACACAGTTCGGGATTCAGAGACTTCCTTTTGAAGCCAGAGCTACTTCGGGCTATTGTAGATTCTGGGTTTGA GCATCCTTCTGAAGTTCAACACGAGTGTATTCCCCAAGCCATCTTGGGAATGGATGTTATCTGCCAAGCTAAGTCTGGGATGGGAAAGACTGCTGTCTTT GTTCTGTCTACTCTCCAGCAAATTGAGCCAACTCCTGGGCAAGTTATTGCCCTTGTTCTATGTCACACAAGAGAACTTGCTTACCAGATCTGCCACGAGT TCGAGAGATTCAGTACCTACTTGCCGGATACCAAGGTTGCTGTATTTTATGGTGGTGTCAACATAAAAACTCACAGGGATCTTCTGAAAAATGAATGCCC TCACGTTGTTGTTGGAACACCTGGTAGAATACTGGCATTGGCGCGAGACAAGGAACTTTCTCTGAAAAATGTTAGACATTTCATTCTTGATGAATGTGAC AAGATGCTTGAATCCCTTGACATGCGGAGAGATGTGCAGGAGATATTCAAGATGACCCCTCATGACAAGCAAGTCATGATGTTTTCTGCAACACTAAGTA AAGAAATCCGCCCAGTATGCAAGAAGTTCATGCAAGATCCGATGGAAATTTATGTTGACGATGAGGCCAAGCTGACACTTCATGGACTTGTCCAGCACTA CATCAAATTGACCGAGCTGGAGAAAAACCGGAAGCTGAACGACCTTCTTGATGCGCTGGACTTCAATCAAGTTGTTATCTTTGTCAAGAGTGTGAGCCGT GCAGCTGAGCTGAACAAGTTGCTAATCGAGTGTAATTTCCCTTCAATATGCATTCACTCTGGAATGTCCCAGGAGGAAAGGCTGACACGCTACAAGGGTT TCAAAGAGGGTCATAAAAGGATTCTTGTTGCTACTGATCTGGTTGGAAGGGGAATAGACATAGAGCGGGTCAACATTGTTATTAACTATGACATGCCTGA TTCAGCTGACACATATCTTCACAGGGTTGGTCGTGCTGGTAGGTTTGGCACAAAGGGGCTTGCGATTACATTTGTATCATCAGCTTCCGACTCAGATGTT CTTAATCAGGTTCAGGAGAGGTTTGAGGTGGACATAAAAGAACTGCCGGAGCAAATTGATACATCTACATACAGTAAGTTTTCTACAACTTCCTTGAATT GTATGTAA
AA sequence Show only first row Show all	>Lus10014260 pacid=23164658 polypeptide=Lus10014260 locus=Lus10014260.g ID=Lus10014260.BGIv1.0 annot-version=v1.0 MGETRDNDYEEELLDYEEEEEKAPDSITAKVNGEAPKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF VLSTLQQIEPTPGQVIALVLCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNIKTHRDLLKNECPHVVVGTPGRILALARDKELSLKNVRHFILDECD KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVSR AAELNKLLIECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDV LNQVQERFEVDIKELPEQIDTSTYSKFSTTSLNCM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10014260 [exp]	0	1
AT5G07670			RNI-like superfamily protein (...		Lus10038927 [exp]	1.4	0.8876
AT5G25800			Polynucleotidyl transferase, r...		Lus10029748 [exp]	2.0	0.8855
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10043390 [exp]	2.6	0.8620
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	3.9	0.8839
AT2G03070		MED8	mediator subunit 8 (.1)		Lus10037308 [exp]	4.9	0.8618
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10009158 [exp]	6.8	0.8351
AT1G29320			Transducin/WD40 repeat-like su...		Lus10023861 [exp]	7.4	0.8554
AT5G48385			FRIGIDA-like protein (.1)		Lus10008744 [exp]	9.0	0.8574
AT5G54570		BGLU41	beta glucosidase 41 (.1)		Lus10037987 [exp]	9.5	0.8545
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10037500 [exp]	10.2	0.8471

Compare expression of checked genes

Lus10014260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.