Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75680 575 / 0 ATGH9B7 glycosyl hydrolase 9B7 (.1) AT1G19940 572 / 0 ATGH9B5 glycosyl hydrolase 9B5 (.1) AT1G02800 385 / 1e-128 ATCEL2 cellulase 2 (.1) AT4G02290 378 / 2e-125 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT4G11050 375 / 5e-123 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT2G32990 370 / 3e-122 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT2G44560 368 / 5e-122 ATGH9B11 glycosyl hydrolase 9B11 (.1) AT2G44540 365 / 7e-121 ATGH9B9 glycosyl hydrolase 9B9 (.1) AT2G44550 359 / 2e-118 ATGH9B10 glycosyl hydrolase 9B10 (.1) AT1G71380 354 / 1e-116 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025965 [exp] 1026 / 0 AT1G75680 549 / 0.0 glycosyl hydrolase 9B7 (.1) Lus10033156 [exp] 607 / 0 AT1G19940 687 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10034515 [exp] 606 / 0 AT1G19940 688 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10008208 [exp] 387 / 7e-129 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10017525 [exp] 382 / 3e-127 AT4G09740 645 / 0.0 glycosyl hydrolase 9B14 (.1) Lus10009724 [exp] 382 / 1e-126 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10032377 [exp] 377 / 2e-123 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10001833 [exp] 376 / 2e-123 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10035316 [exp] 372 / 4e-123 AT2G32990 751 / 0.0 glycosyl hydrolase 9B8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G115400 [exp] 642 / 0 AT1G19940 586 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.005G237700 [exp] 608 / 0 AT1G19940 678 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.002G023900 [exp] 600 / 0 AT1G19940 672 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.002G202400 [exp] 385 / 4e-128 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G157600 [exp] 384 / 1e-127 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.007G071200 [exp] 381 / 3e-125 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.001G083200 [exp] 376 / 4e-125 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.014G126900 [exp] 375 / 3e-124 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G356000 [exp] 372 / 4e-123 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G092200 [exp] 372 / 1e-121 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10014265 pacid=23164769 polypeptide=Lus10014265 locus=Lus10014265.g ID=Lus10014265.BGIv1.0 annot-version=v1.0 ATGAAATCGATGGAATTTGTGATCAAGAAGCTGAAGCCTCCAAAGACTCCACAGAAGGAAGTCGAAGCAGTGACAAAGAACGTCGAGGTGAGGAAGAACG AGTTCTGGGGATGGTGTTTCTTAGCTACCTGTCTTGCCGTTCTGGTTGTATCATTAGGCATCTACACTCTCATCACCCTCCGTCACCACTTCCGCCGCCA CAACAAACACCCCGGCCTCGCTTCCGGACCTATCCTCGACAACTACGCCGATGCTCTGAGTGTTGCCGTCCAGTTTTTCGACGTCCAGAAGTCTGGTAAG ATAACAACGTCGGGAAACAGAATCCCTTGGAGAGGTGACTCGGCTTTGCGAGACGGAAGCGAGAGGAACTTGGACTTATCGAAAGGGCTATACGACGCCG GCGACAATGTCAAATTCGGGTTTCCGATGGCTTTCACGGCCACCCTATTGTCCTGGTCCATTCTCGAGTACGGTCAAAGGATGGCATCCGTTGACCAACT TGTTCATGCTCAACAATCTCTCAGATGGATCACTGACTTCCTCATCAACGCCCACCCTTCCCCCAACGAGTTCTATGTTCAGGTGGGGGATCCGGGAATC GACCATGAATGCTGGGAAAAGCCAGAGAGGATGGGAAACGAGAAGCGCCCACTAACTCAAGTAAACGCATCCTACCCAGGATCCGACGTGGTAGCAGAAG CAGCAGCCGCCATGGCATCGGCATCACTCGTCTTCAAGCAGCTAGACCCTCACTACTCCGATCTCCTGCGGGCAAACGCAGAGGAGCTTTTCACCTTTGC AGACCTCTACAGAGGCTTATACAGCGTCAGCATTCCACAAGTGGGCAAGTACTACAACTCCTCTGGGTACGGAGACGAACTCCTCTGGGCCGCCTCGTGG CTTTACTACGCAACCAGAGACCCTTCCTACTTGAAATACGTCACTGTCGTCAATGGAGATGCTTTTGGTAACTGGGCCGATCCCTCTTGGTTCAGTTGGG ATGATAAGCATGCTGGAACTCAGGTTTTGATTTCTAGATTGAACCTTTTGGGAGGTGGGGAAAATGGTGGAATGACTGCTGATGAGAATGTAAAGGTTCA GATGTATACCAGAATGGCTCAGGCCGCCATGTGCCAACTGTTTCCTGATTCACCTTCCGCCACAGCTAGCAGAACATCTGGCGGGTTGATATGGGTGCAA GAGTGGAACCCTCTGCAATACTCTATGGCATCTGCATTCTTAGCAGTTCTCTTCAGTGATTACATGGCCACATCTCAAGTCCAAACTCTCTACTGTGACG GAACAACTTACAGTTCCAAGGATCTTCGAGACTTCGCCATGTCACAAGCAGATTATATACTGGGAAAGAATCCAATGGACATGAGCTATCTAGTTGGCTA CGGACTTGATTACCCACGCTACGTCCACCACAGAGGATCATCAATCCCAGTCGGTTCCAGAACTGGGTGTAGAGACGGATTCAAGTGGCTGGATTCCGTT ACCCCAAATCCAAACGTAGCTCTTGGAGCTGTAGTTGGTGGACCATCCAAGAACGAAACTTTCAACGACGACAGAAGAAACACTATGCAAACTGAACCTA CAACTTACAACTCTGCATTCATCGTCGGCCTCCTCTCTGGCTTGCTAAGCACCGGCCCCGTTGCTCAGTCGTTTGCATAG
AA sequence Show only first row Show all	>Lus10014265 pacid=23164769 polypeptide=Lus10014265 locus=Lus10014265.g ID=Lus10014265.BGIv1.0 annot-version=v1.0 MKSMEFVIKKLKPPKTPQKEVEAVTKNVEVRKNEFWGWCFLATCLAVLVVSLGIYTLITLRHHFRRHNKHPGLASGPILDNYADALSVAVQFFDVQKSGK ITTSGNRIPWRGDSALRDGSERNLDLSKGLYDAGDNVKFGFPMAFTATLLSWSILEYGQRMASVDQLVHAQQSLRWITDFLINAHPSPNEFYVQVGDPGI DHECWEKPERMGNEKRPLTQVNASYPGSDVVAEAAAAMASASLVFKQLDPHYSDLLRANAEELFTFADLYRGLYSVSIPQVGKYYNSSGYGDELLWAASW LYYATRDPSYLKYVTVVNGDAFGNWADPSWFSWDDKHAGTQVLISRLNLLGGGENGGMTADENVKVQMYTRMAQAAMCQLFPDSPSATASRTSGGLIWVQ EWNPLQYSMASAFLAVLFSDYMATSQVQTLYCDGTTYSSKDLRDFAMSQADYILGKNPMDMSYLVGYGLDYPRYVHHRGSSIPVGSRTGCRDGFKWLDSV TPNPNVALGAVVGGPSKNETFNDDRRNTMQTEPTTYNSAFIVGLLSGLLSTGPVAQSFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75680		ATGH9B7	glycosyl hydrolase 9B7 (.1)		Lus10014265 [exp]	0	1
AT5G66840			SAP domain-containing protein ...		Lus10008134 [exp]	6.2	0.8487
AT2G40435			unknown protein		Lus10025257 [exp]	11.0	0.7609
AT5G56950		NFA3, NFA03, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10001231 [exp]	25.1	0.7266
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10007643 [exp]	27.5	0.7289
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10016200 [exp]	28.1	0.7542
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10038514 [exp]	31.9	0.7368
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10018758 [exp]	35.1	0.7517
AT5G54010			UDP-Glycosyltransferase superf...		Lus10003154 [exp]	37.5	0.6969
AT3G60220		ATL4	TOXICOS EN LEVADURA 4 (.1)		Lus10019496 [exp]	45.9	0.7524
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10031352 [exp]	62.9	0.7351

Compare expression of checked genes

Lus10014265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.