Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18050 98 / 6e-27 HIS1-3 histone H1-3 (.1.2) AT2G30620 61 / 5e-12 winged-helix DNA-binding transcription factor family protein (.1.2) AT1G06760 50 / 8e-08 winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025968 [exp] 115 / 8e-33 AT2G18050 132 / 6e-39 histone H1-3 (.1.2) Lus10042541 [exp] 68 / 4e-14 AT2G30620 121 / 3e-33 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10022001 [exp] 67 / 8e-14 AT2G30620 115 / 3e-31 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10006562 [exp] 59 / 2e-11 AT2G30620 112 / 2e-31 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10005534 [exp] 58 / 1e-10 AT2G30620 116 / 9e-32 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10005535 [exp] 54 / 3e-09 AT2G30620 124 / 8e-35 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10006561 [exp] 51 / 3e-08 AT2G30620 115 / 1e-31 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10014653 [exp] 43 / 4e-05 AT5G15340 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033775 [exp] 41 / 0.0001 AT5G15340 635 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G116600 [exp] 99 / 9e-27 AT2G18050 117 / 3e-33 histone H1-3 (.1.2) Potri.007G014200 [exp] 94 / 8e-25 AT2G18050 109 / 2e-30 histone H1-3 (.1.2) Potri.008G162300 [exp] 59 / 2e-11 AT2G30620 76 / 2e-17 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.010G076800 [exp] 59 / 2e-11 AT1G06760 77 / 4e-17 winged-helix DNA-binding transcription factor family protein (.1) Potri.013G042700 [exp] 57 / 8e-11 AT2G30620 66 / 2e-13 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.002G199900 [exp] 51 / 2e-08 AT2G30620 84 / 4e-20 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.005G219800 [exp] 51 / 3e-08 AT1G06760 89 / 1e-20 winged-helix DNA-binding transcription factor family protein (.1) Potri.002G043100 [exp] 46 / 2e-06 AT2G30620 92 / 3e-22 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.014G004900 [exp] 44 / 1e-05 AT5G67580 224 / 6e-72 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.009G087000 [exp] 42 / 4e-05 AT1G49950 277 / 5e-93 telomere repeat binding factor 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00538 [flax] [poplar] Linker_histone linker histone H1 and H5 family
Representative CDS sequence Show only first row Show all	>Lus10014267 pacid=23164728 polypeptide=Lus10014267 locus=Lus10014267.g ID=Lus10014267.BGIv1.0 annot-version=v1.0 ATGGCTGATGACAAGGAAAATCAAGTTCCAGTCACTGATCCTCAAGTAGTGCAGCCACCGGCGCCGGGAGGAGGAGCAGAAGAAGCCGGTGGGAGAAAAC CGCCGCTCATCCACCTTATTTCCAGGTACTTAGGCCACGTTTTCCGCTATTTTGGATTCAAGGCCAAATATATGATCAAAGAAGCTTTGATGGCGTTGGA CGAGAAGAGCGGATCGAGCCCGTACGCTATAGCGAAGAAAATGGAGGAAAAGCACAAAGCGGTGCTTCCAGCTAATTTCAGGAAGACTCTGGCGGTGCAG CTGAAGAACTCGGAAGCCAAGGGGAAGCTGATCAAAATCAAAGCTTCTTACAAGCTCCCGTCATCCGAGTCGGGAAAGAAGAAGAAGGAGAATAAATCAT CATCTCATCCTCCGTGA
AA sequence Show only first row Show all	>Lus10014267 pacid=23164728 polypeptide=Lus10014267 locus=Lus10014267.g ID=Lus10014267.BGIv1.0 annot-version=v1.0 MADDKENQVPVTDPQVVQPPAPGGGAEEAGGRKPPLIHLISRYLGHVFRYFGFKAKYMIKEALMALDEKSGSSPYAIAKKMEEKHKAVLPANFRKTLAVQ LKNSEAKGKLIKIKASYKLPSSESGKKKKENKSSSHPP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18050		HIS1-3	histone H1-3 (.1.2)		Lus10014267 [exp]	0	1
AT5G46030			unknown protein		Lus10015293 [exp]	2.4	0.8900
AT1G76570			Chlorophyll A-B binding family...		Lus10015235 [exp]	3.5	0.8617
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10010188 [exp]	4.2	0.8624
AT5G11900			Translation initiation factor ...		Lus10024986 [exp]	4.5	0.8520
AT4G27130			Translation initiation factor ...		Lus10031550 [exp]	5.0	0.8467
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10022359 [exp]	8.5	0.8283
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10016510 [exp]	9.4	0.8393
AT3G08890			Protein of unknown function, D...		Lus10022674 [exp]	13.0	0.8165
AT1G56423			unknown protein		Lus10029844 [exp]	13.0	0.8425
AT4G01790			Ribosomal protein L7Ae/L30e/S1...		Lus10007191 [exp]	15.5	0.8152

Compare expression of checked genes

Lus10014267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.