Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66310 664 / 0 ATP binding microtubule motor family protein (.1) AT3G51150 664 / 0 ATP binding microtubule motor family protein (.1.2) AT2G21300 608 / 0 ATP binding microtubule motor family protein (.1.2) AT4G38950 603 / 0 ATP binding microtubule motor family protein (.1.2) AT4G24170 576 / 0 ATP binding microtubule motor family protein (.1) AT1G18370 464 / 1e-146 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) AT3G43210 443 / 7e-139 TES, ATNACK2 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) AT5G42490 396 / 5e-120 ATP binding microtubule motor family protein (.1) AT3G10180 290 / 3e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G59540 276 / 7e-79 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025969 [exp] 1997 / 0 AT3G51150 694 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10031086 [exp] 605 / 0 AT2G21300 1026 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10035471 [exp] 599 / 0 AT2G21300 1011 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10033920 [exp] 559 / 0 AT3G51150 578 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10015448 [exp] 547 / 0 AT3G51150 558 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10010624 [exp] 553 / 2e-180 AT3G51150 577 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10032452 [exp] 464 / 1e-146 AT1G18370 1452 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Lus10005181 [exp] 457 / 3e-144 AT3G43210 1189 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Lus10042952 [exp] 462 / 1e-141 AT1G18370 1206 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G014800 [exp] 750 / 0 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1) Potri.005G116900 [exp] 727 / 0 AT3G51150 668 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.002G027600 [exp] 614 / 0 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.004G162800 [exp] 606 / 0 AT2G21300 1031 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.009G124500 [exp] 600 / 0 AT2G21300 752 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.006G136600 [exp] 469 / 8e-149 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.012G054400 [exp] 460 / 3e-145 AT1G18370 1466 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.015G044600 [exp] 446 / 1e-139 AT1G18370 1518 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.006G040700 [exp] 303 / 1e-85 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G161100 [exp] 288 / 3e-81 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0023 [flax] [poplar] PF11995 [flax] [poplar] DUF3490 Domain of unknown function (DUF3490)
Representative CDS sequence Show only first row Show all	>Lus10014268 pacid=23164739 polypeptide=Lus10014268 locus=Lus10014268.g ID=Lus10014268.BGIv1.0 annot-version=v1.0 ATGGGGGCAGTTGAAGATGAAGAGTCGATCTACGAACCAAAAGACGGGGAAGAGAAAATTTTGGTATCGGTTCGAGTAAGGCCCCTGAATGAGAAGGAAG CTACAAGACATGATGTGTCGGACTGGGAATGCATCAATGACACCACTGTCATTTACAGAAACAATCTCTCTGTCTCTGATCGTTCAATGTACCCATCTGC ATATACCTTTGACAAAGTCTTTGGTCCTGATTGTCCGACAAATCAGGTCTATAAGGACGGGGCTAAGGCAGTTGCTCTTTCTGTTGTCAGCGGTATAAAT TCAAGTGTATTTGCTTATGGACAAACGAGTAGCGGAAAGACATACACAATGCGGGGGATCACCCACTATACTGTAGCTGATATATATGAGTATGTGGAGA GACACAAGGAAAGAGAGTTTAGCTTGAAGTTCTCTGCAATGGAGATTTACAATGAATCTGTTAGAGACCTCCTTAGTGTGGATTCAACTCCTCTTCGACT TCTAGACGATCCAGAGAGAGGGACTGTTGTTGAGCGGTTGACTGAGGAAACTCTTAGAGATTGGAATCATTTTCAAGAACTCATGTCAATTTGTGAAGCT CAGAGACAAATAGGGGAGACTTCCCTTAATGAGACAAGCTCTAGATCTCATCAAATATTAAGGCTGACAATTGACAGTTCTGCAGTTGAGTTTCTAGGAA AAGACAAGTCGAGCACTCTCTCGGCTACTGTGAATTTTATCGATTTAGCTGGAAGTGAGCGTGCGTCTCAGGCAATGTCTGCCGGCATGAGGTTAAAAGA AGGTTGCCATATAAATCGCAGTTTACTGACATTGGGGACTGTTATCCGTAAACTAAGTAAAGGAAGGAATGGGCATATCCCTTTCAGAGATTCAAAGTTG ACTCGCATATTGCAGTCGTCCTTGGGAGGAAATGCTAGGACTGCCATTATCTGCACAATGAGCCCTGCACGAACCCATGTAGAGCAGTCCAGAAACACAC TCCTATTTGCTAGTTGTGCTAAAGAAGTTTCGACTAATGCACGGGTCAATGTTGTTATGACTGATAAAGCATTGGTTAAGCAACTACAAAGAGAACTGGC AAGATTGGAGAACGAATTAAGAAGTGCAGGATCGAAACCTGTTTCGTCAAATGTCACTGAATTATTGAGGAAAAAGGACCAGGAAATTGAAAATCTTACG AAAGAAGTAGCTGATCTGACTAGACAACTAAACGTAGTTGAATCTCGTGTTGAAGATCAGCAACCAGAGAGAGTCAGAGTCTCATTTCCATGGGAGGTAG AGGCGGGTCAGCAATACCCAAAGTTGCGAGTTCAGAATTCCTGGAAATCGGAGACCTCGATATCATATTCACCAATTTCTGAGGATCCCCGCATGACAGT AAGATCTTTTGAACCATCCCAAACTTCAGAGGACCAATGCAGCATAATATCTGATGAGACCTTTAACCAACTCGCCGAATTTCAAGAGTTCCTTCAGTCA TATGCCTCGCCAGACATATCATACACAACCGATAATAAACGTACTAAAGGTGGAGCGCATGAGATGGAAAATGAAAAGCAGCAGATTCATGAGAGTCTAA TACCCATTCCCTGCAAAGAAGTGCAATGCATCGAGGTCGACAACTCGGCCAGCACTAGCAGCAGCATTTCGTCCAATGTGATAGAGTCAGCATCCAGCCC TAATAACAAACATTCCGACTCTGTAGTTTCATCTCCCCCTCGTCCAGAGGTTGATGATGAAACTCACAAAGCGAAAGAAATAGTCTTGTCTCCACTTAAG GAGGAAGAAGAACCACCTTTGGTGGAGAAGGAATTAGTTTTTTCGCCATTGATGGAGGAGAAAGAAGCTGAGCTGGACAAAGGAGCTGTTTATTCTCCAT CGAAGGAGGAGAAAGAAACTGAGGTGGACAAAGACGCTGTTTCTTCTCCATTGAAGGAGGAGATGGAAGAAGACGAGGAGAAGAGAGAAGTAGTTTCCTC TTCTCCAACGGGCGAGACAGAAGCTGAGGAGAAGGAAAAACTAGTTCATTTTCCAATGAGTGATGAGCAAGAAACTGATGATAAGAAATCACTAGCTTCG TCGCCAGTGAAGAATGAGAAGGAGATGGAGGATAAGGAAGAAAAACTAGCTTCATCTCCTCTAAAGGAGGAGAAGGAAGCTGAGACGACAGAAGAAGAAG CTAGGGAAAACAAAGGACCGGGTTCATTTTCAATCCAACAGAAAGAGGTGAATGATTCGCCATCTGATTTTAACAGGATAGGCAGTGAGACATCATCTCC AAGGGACTTCATTATACCTTCCCCGGAGAAATCTCCATGGCTGATGGAGGAAGACGTATATACCCCTCGAAGCTTGAGGTTGATCAGGAGCAAAAGCGCT AGAGCAGCTGTAACAACCAAATCAACTCATTGGTTTGAGAGGACAGAAAAGCATGACAGTACACCTCCGTCCATATTCGACAAATGTTTCACTCAGAGAA GAGCAAGTGTTGCTGGTCCGATTTTCCCCTTGAGGTACGATCTTCAAAATGATGGGTTATCAGGGAGAAGCTCTCAGGATTCTGAAACTACTCCTGGTGC TGATGATCTTGATCACAATGGCGAAACTCCTAGTGATTGGAGGAGCAGTAGAGCTAGAAACATGGCTGTTGCAACTACAGACATGCCTGAATCAAGTCTG GCTGTAGTACCTGAAAAGAGAGATGTGGGTTTGGATCCCATTCAAGACGATGGAGGAACTTCTCCATCATGGCCTGCGGAATTCCAGAGGCTGCAAGGAG AGATCATTCTGCTTTGGCATTCGTGCAACATTTCCTTAGTACACAGAACCTATTTCTTTCTTCTGTTCAAAGGTGATCCTGCGGATTCTTTCTACATGGA GGTGGAGCTCAGAAGACTGTCTTTCCTGAAGGACACCTATTCCAAAGGCAACCAGCAGCCTATGGCCCATTCAGAAGTCATGACAGCATCTTCCAGCAAA AGAGCCTTGGATGAAGAGAAGCATATGCTGTGCAAGCAAATGCAGAGGAACCTGACCAAGGAAGAAAGGGAGAACCTTTTCTTGAGATGGGGCATCAAGT TGAACTCTCAAAACAGAAGACTGCAACTGGTGAGCCGGCTGTGGACCAAGACGAGTGACATGGATCACATTTCGGAGAGCGCCAATGTGGTAGCGAAGCT AGTTGGTTTCGACGAAGGGAAAGAGCTTGCCATGAAGGGGATGTTTGGACTCCTCAATTTCACACCGAAACTGAACAGGAGAAGAACTTCCTTATGGAAA CGAAGCGTGCTTTCCATCTTATAA
AA sequence Show only first row Show all	>Lus10014268 pacid=23164739 polypeptide=Lus10014268 locus=Lus10014268.g ID=Lus10014268.BGIv1.0 annot-version=v1.0 MGAVEDEESIYEPKDGEEKILVSVRVRPLNEKEATRHDVSDWECINDTTVIYRNNLSVSDRSMYPSAYTFDKVFGPDCPTNQVYKDGAKAVALSVVSGIN SSVFAYGQTSSGKTYTMRGITHYTVADIYEYVERHKEREFSLKFSAMEIYNESVRDLLSVDSTPLRLLDDPERGTVVERLTEETLRDWNHFQELMSICEA QRQIGETSLNETSSRSHQILRLTIDSSAVEFLGKDKSSTLSATVNFIDLAGSERASQAMSAGMRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKL TRILQSSLGGNARTAIICTMSPARTHVEQSRNTLLFASCAKEVSTNARVNVVMTDKALVKQLQRELARLENELRSAGSKPVSSNVTELLRKKDQEIENLT KEVADLTRQLNVVESRVEDQQPERVRVSFPWEVEAGQQYPKLRVQNSWKSETSISYSPISEDPRMTVRSFEPSQTSEDQCSIISDETFNQLAEFQEFLQS YASPDISYTTDNKRTKGGAHEMENEKQQIHESLIPIPCKEVQCIEVDNSASTSSSISSNVIESASSPNNKHSDSVVSSPPRPEVDDETHKAKEIVLSPLK EEEEPPLVEKELVFSPLMEEKEAELDKGAVYSPSKEEKETEVDKDAVSSPLKEEMEEDEEKREVVSSSPTGETEAEEKEKLVHFPMSDEQETDDKKSLAS SPVKNEKEMEDKEEKLASSPLKEEKEAETTEEEARENKGPGSFSIQQKEVNDSPSDFNRIGSETSSPRDFIIPSPEKSPWLMEEDVYTPRSLRLIRSKSA RAAVTTKSTHWFERTEKHDSTPPSIFDKCFTQRRASVAGPIFPLRYDLQNDGLSGRSSQDSETTPGADDLDHNGETPSDWRSSRARNMAVATTDMPESSL AVVPEKRDVGLDPIQDDGGTSPSWPAEFQRLQGEIILLWHSCNISLVHRTYFFLLFKGDPADSFYMEVELRRLSFLKDTYSKGNQQPMAHSEVMTASSSK RALDEEKHMLCKQMQRNLTKEERENLFLRWGIKLNSQNRRLQLVSRLWTKTSDMDHISESANVVAKLVGFDEGKELAMKGMFGLLNFTPKLNRRRTSLWK RSVLSIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66310			ATP binding microtubule motor ...		Lus10014268 [exp]	0	1
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10004281 [exp]	1.0	0.9779
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10040676 [exp]	1.4	0.9777
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10008974 [exp]	3.5	0.9772
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10025016 [exp]	4.5	0.9426
AT3G54100			O-fucosyltransferase family pr...		Lus10035540 [exp]	4.5	0.9673
AT1G09170			P-loop nucleoside triphosphate...		Lus10020682 [exp]	4.9	0.9699
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10001430 [exp]	5.5	0.9336
AT3G54100			O-fucosyltransferase family pr...		Lus10027753 [exp]	5.5	0.9619
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10019231 [exp]	6.6	0.9409
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10021412 [exp]	6.7	0.9433

Compare expression of checked genes

Lus10014268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.