Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15380 165 / 5e-52 GLYI4 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) AT1G80160 163 / 2e-51 GLYI7 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) AT2G28420 157 / 6e-49 GLYI8 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) AT2G32090 46 / 1e-06 Lactoylglutathione lyase / glyoxalase I family protein (.1.2) AT5G57040 47 / 2e-06 Lactoylglutathione lyase / glyoxalase I family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025971 [exp] 327 / 7e-116 AT1G15380 165 / 3e-52 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10014480 [exp] 159 / 1e-49 AT1G80160 244 / 1e-83 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10030070 [exp] 157 / 4e-49 AT1G80160 247 / 7e-85 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10039579 [exp] 157 / 1e-48 AT2G28420 248 / 2e-84 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10005324 [exp] 157 / 1e-48 AT2G28420 245 / 2e-83 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10017158 [exp] 45 / 6e-06 AT5G57040 254 / 7e-87 Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10006122 [exp] 44 / 2e-05 AT2G32090 199 / 3e-67 Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10010552 [exp] 42 / 7e-05 AT2G32090 197 / 3e-66 Lactoylglutathione lyase / glyoxalase I family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G117000 [exp] 242 / 4e-82 AT1G80160 166 / 2e-52 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.007G015100 [exp] 235 / 2e-79 AT1G15380 167 / 7e-53 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.003G009000 [exp] 184 / 6e-59 AT1G80160 190 / 8e-62 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.004G223300 [exp] 177 / 4e-56 AT1G80160 187 / 1e-60 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.001G171600 [exp] 170 / 5e-54 AT1G80160 270 / 6e-94 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.003G062400 [exp] 168 / 2e-53 AT1G80160 261 / 2e-90 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.009G055500 [exp] 158 / 4e-49 AT2G28420 229 / 1e-77 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) Potri.007G129200 [exp] 155 / 1e-48 AT1G80160 225 / 1e-76 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.010G087000 [exp] 46 / 2e-06 AT2G32090 189 / 3e-63 Lactoylglutathione lyase / glyoxalase I family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [flax] [poplar] Glyoxalase PF00903 [flax] [poplar] Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10014269 pacid=23164673 polypeptide=Lus10014269 locus=Lus10014269.g ID=Lus10014269.BGIv1.0 annot-version=v1.0 ATGGTGGAGGAGAATGAGATAGAGGAAGTGAGGAGCTACATCAGCAGCAGCAGCAGCCAGCAGGCACTGCCACTGGTGTCTTTGAATCACGTGTCGTTGA TGTGCAGGTCGGTGTGGGAATCAACGAGGTTTTACGAGGACGTGATGGGCTTTCTCCTCATTAAGCGCCCTTCTTCTTTCAACTTCACCGGCGCCTGGTT GTACAATTATGGAATTGGGATACATCTTATTGAGAACACATCACTGGATACTGATCAATTCGAGCCGCGCCCGATCAACCCCAAAGACAATCACATTTCA TTCCAATCTACAGATGTAAAGGTCGTTCAGAGGAGGCTGGAGGAGTTGGGGATGAGATACGAGACAGCAGTGGTGGAGGATGATGAAGGGGCGAAAGTGG ATCAACTATTCTTCCATGACCCAGATGGTTACATGCTGGAAATCTGCAACTGCGACAACATCCCGATCTTGCCCCACTCCACCTCCAAGGAGAAATCTGC AGGAGGAGCAAAATGTGGGATGTTGCTGTTAATGGAGAATGAGATGATGGAGAGCTTGAGCATGGATATCATGAACCTTGCCTTTTGA
AA sequence Show only first row Show all	>Lus10014269 pacid=23164673 polypeptide=Lus10014269 locus=Lus10014269.g ID=Lus10014269.BGIv1.0 annot-version=v1.0 MVEENEIEEVRSYISSSSSQQALPLVSLNHVSLMCRSVWESTRFYEDVMGFLLIKRPSSFNFTGAWLYNYGIGIHLIENTSLDTDQFEPRPINPKDNHIS FQSTDVKVVQRRLEELGMRYETAVVEDDEGAKVDQLFFHDPDGYMLEICNCDNIPILPHSTSKEKSAGGAKCGMLLLMENEMMESLSMDIMNLAF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Lus10014269 [exp]	0	1
AT5G43150			unknown protein		Lus10004910 [exp]	2.6	0.8913
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10032391 [exp]	3.9	0.8601
AT1G27200			Domain of unknown function (DU...		Lus10013291 [exp]	5.8	0.8911
AT4G33040			Thioredoxin superfamily protei...		Lus10013519 [exp]	7.1	0.8763
AT1G27200			Domain of unknown function (DU...		Lus10030815 [exp]	8.0	0.8656
AT5G65380			MATE efflux family protein (.1...		Lus10015903 [exp]	9.4	0.8192
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10039900 [exp]	13.0	0.8030
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10018598 [exp]	13.0	0.8479
AT5G43150			unknown protein		Lus10010543 [exp]	17.2	0.8276
AT4G27360			Dynein light chain type 1 fami...		Lus10038566 [exp]	18.3	0.8374

Compare expression of checked genes

Lus10014269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.