Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51130 701 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025972 [exp] 815 / 0 AT3G51130 704 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G117200 [exp] 722 / 0 AT3G51130 711 / 0.0 unknown protein Potri.007G015800 [exp] 714 / 0 AT3G51130 706 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03676 [flax] [poplar] UPF0183 Uncharacterised protein family (UPF0183)
Representative CDS sequence Show only first row Show all	>Lus10014270 pacid=23164713 polypeptide=Lus10014270 locus=Lus10014270.g ID=Lus10014270.BGIv1.0 annot-version=v1.0 ATGATGCAACAACACCATCAGCGATCACGGCCCCGCTGCGAAGGCACAGCTATGGGCGCCATCGTCCTCGATCTCCGCCCTGGCCTCGGCATCGGCCCCT TTTCTCTCGGGATGCCAATTTGCGAAGCCTTCGCTCAGATTGAGCAACAACCTAATCTCTACGACGTTGTCCATGTGAAGTACTACGACGAGGAACCGTT GAAACTTGATATTGTTATTAGCTTTCCAGATCATGGTTTTCACCTTCGATTCGATCCTTGGTCCCAGAGGCTAAGACTGGTTGAGATATTTGATGTAAAA CGGCTTCAAATGCGCTATGCCACTTCTATGATTGGTGGACCGGGCAGCATGGCAACATTTCTTGCTGTATATTCTCTTTTTGGCCCTACGTTTCCTGGGA TCTATGACAAGGATAGAGGAGTTTATACTCTTTTTTACCCGGGCCTATCGTTTGCGTTCCCAATTCCTGGGCAGTATGCAGACTGCTGTCAGGATAGAGA AGCTGAACTTCCTCTGGAGTTTCCAGATGGAACGACACCAGTTACATGTCGGGTTTGTGTATATGATGGTTCGAGTGACAAAAAAGTCGGTGTTGGATCC CTTTTGGATAAGGCTGTTACCCCTCCTTTACCTTCTGGCAGTCTGTACATGGAAGAAGTGCAAGTAAAGCTTCGTGAAGAGTTGTTCTTTTCAATCGGAG GGCAGCATATTCCCTTTGGTGCATCACCACAGGATGTATGGACAGAATTAGGCCGCCCTTGTGGAATCCATCAAAAGCAGGTAGATCAGATGGTTATCCA CTCGGCGTCAGACCCTTCTCCACGAACTACACTTTGTGCTGATTACTTCTATAATTATTTCACTCGAGGCTTGGACATCTTATTTGATGGGCAGACCCAT AAAGTTAAGAAGTTTGTTCTCCATAGCAATTATCCTGGCCATGCAGACTTCAATTCTTACATAAAGTGCAATTTTGTTATCCAAGTAAATAACTCGAAGC AGAGTATTACCCCTAGCACCAAATGGGAGCAAGTAAAGGGGATCTTAGGGGATTGTGGTCGTGCAGCTATCCAAACACAAGGTTCTACAAGCAATCCTTT TGGATCCACTTTTGTATATGGGTACCAGAACATTGCCTTGGAGGTGATGAAAAATGGTCACATTGCTACTATAACTCTTTTCCAGTCATGA
AA sequence Show only first row Show all	>Lus10014270 pacid=23164713 polypeptide=Lus10014270 locus=Lus10014270.g ID=Lus10014270.BGIv1.0 annot-version=v1.0 MMQQHHQRSRPRCEGTAMGAIVLDLRPGLGIGPFSLGMPICEAFAQIEQQPNLYDVVHVKYYDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLVEIFDVK RLQMRYATSMIGGPGSMATFLAVYSLFGPTFPGIYDKDRGVYTLFYPGLSFAFPIPGQYADCCQDREAELPLEFPDGTTPVTCRVCVYDGSSDKKVGVGS LLDKAVTPPLPSGSLYMEEVQVKLREELFFSIGGQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPSPRTTLCADYFYNYFTRGLDILFDGQTH KVKKFVLHSNYPGHADFNSYIKCNFVIQVNNSKQSITPSTKWEQVKGILGDCGRAAIQTQGSTSNPFGSTFVYGYQNIALEVMKNGHIATITLFQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51130			unknown protein		Lus10014270 [exp]	0	1
AT1G33360			ATP-dependent Clp protease (.1...		Lus10000933 [exp]	3.2	0.8750
AT4G32160			Phox (PX) domain-containing pr...		Lus10002925 [exp]	3.5	0.9002
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10019899 [exp]	3.9	0.8806
AT5G45190			Cyclin family protein (.1.2)		Lus10041213 [exp]	4.2	0.8840
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043014 [exp]	4.2	0.8796
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Lus10000937 [exp]	4.5	0.8549
AT5G01990			Auxin efflux carrier family pr...		Lus10035610 [exp]	4.6	0.8527
AT5G10650			RING/U-box superfamily protein...		Lus10026226 [exp]	4.7	0.8931
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	5.7	0.8776
AT3G49490			unknown protein		Lus10015581 [exp]	6.0	0.8769

Compare expression of checked genes

Lus10014270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.