Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51120 639 / 0 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) AT2G16485 569 / 9e-174 nucleic acid binding;zinc ion binding;DNA binding (.1) AT2G18090 350 / 6e-103 PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein (.1) AT5G63700 209 / 4e-57 zinc ion binding;DNA binding (.1) AT5G08430 144 / 2e-35 SWIB/MDM2 domain;Plus-3;GYF (.1) AT5G23480 105 / 1e-22 SWIB/MDM2 domain;Plus-3;GYF (.1) AT2G14880 47 / 2e-05 SWIB/MDM2 domain superfamily protein (.1) AT4G34290 47 / 2e-05 SWIB/MDM2 domain superfamily protein (.1) AT2G35605 45 / 4e-05 SWIB/MDM2 domain superfamily protein (.1) AT2G37520 47 / 0.0001 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025973 [exp] 2590 / 0 AT3G51120 487 / 2e-148 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10025974 [exp] 765 / 0 AT3G51120 395 / 3e-120 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10014272 [exp] 716 / 0 AT3G51120 391 / 7e-120 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10042072 [exp] 574 / 6e-175 AT2G16485 1007 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Lus10018078 [exp] 547 / 2e-164 AT2G16485 986 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Lus10020897 [exp] 100 / 2e-21 AT5G08430 228 / 4e-68 SWIB/MDM2 domain;Plus-3;GYF (.1) Lus10019640 [exp] 47 / 8e-05 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10027738 [exp] 47 / 0.0002 AT2G36720 821 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10035553 [exp] 46 / 0.0003 AT2G36720 809 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G117300 [exp] 803 / 0 AT2G16485 695 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.007G016000 [exp] 801 / 0 AT2G16485 709 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.004G161700 [exp] 606 / 0 AT2G16485 1050 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.009G123800 [exp] 590 / 0 AT2G16485 1064 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.011G078050 [exp] 250 / 2e-68 AT5G63700 368 / 3e-116 zinc ion binding;DNA binding (.1) Potri.001G305900 [exp] 220 / 5e-61 AT5G63700 406 / 2e-135 zinc ion binding;DNA binding (.1) Potri.004G133600 [exp] 138 / 2e-33 AT5G08430 405 / 3e-135 SWIB/MDM2 domain;Plus-3;GYF (.1) Potri.006G120200 [exp] 45 / 0.0003 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.016G097300 [exp] 45 / 0.0004 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.008G152600 [exp] 44 / 0.001 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03126 [flax] [poplar] Plus-3 Plus-3 domain PF02201 [flax] [poplar] SWIB SWIB/MDM2 domain CL0673 [flax] [poplar] GYF PF02213 [flax] [poplar] GYF GYF domain
Representative CDS sequence Show only first row Show all	>Lus10014271 pacid=23164756 polypeptide=Lus10014271 locus=Lus10014271.g ID=Lus10014271.BGIv1.0 annot-version=v1.0 ATGGAGCAACAGCAGCAGCAGCACCAGGTGTCCAGGATTTGGAAAGGGGAAGGAGAGCAGAGTCAGCGGGGTGGTGTTTTCGACAGTTTGTTGCGGGGGG TTGGAGCTGAGGACATGACTATCGATCAGTGCGAGGCGATTCGGGAAATGGACCACTCTCAGCTCATCGGAGCTCCTGTCGCGGTATCATCAGACGTTGT TGCTAAAGTAGACTCGGTGGCTATTGTGGACGTCCGAGTTGGAAATGCGGTTGCTGCTGTACCTGAGATCAGTACTGTGAAGAGGAGGCGTGGTCGGCCT CCGCGTAATCAGGGGAAAGTAGCACCTCCTCCTCCGAAGGCGATGGAGGAAGAAGATGTTTGTTTCATTTGCTTCGACGGTGGTAGCTTAGTGCTATGCG ATCGCCGGGGCTGCCCTAAAGCATACCACCCAGCTTGTATCAAGAGGGATGACGCTTTTTTCCAATCAAAGGCCAAATGGAACTGTGGGTGGCATATTTG TAGCAGTTGCGAGAGGGCTTCTCATTTTATGTGCTACACATGTACATACTCTCTTTGCAAAGGGTGCACCAAAGATGCTGCTTACTTGTGCGTGAGAGGA AACAAAGGGTTTTGTCGACAGTGCATGAAAATGATAAAGTTGATTGAAAAAGTACCTCTGGAGAATGGCGAGCAGGTTCAAGTGGACTTTGATGATAAAG GTAGCTGGGAGTACCTTTTTAAAGTGTATTGGGTTTGCCTTAAAGAAGGCTTGTCGTTGACAGTAGATGAAATTTTAAAGGCTAAAAATCCCTGGAATGT TGATGAGTTACCTAAAGCTAAAAGCCCTTGGAAAGTTCCTGCTGCTGTGGATCCTGTGTCAGAATCTTCAGGTGAACTTTATTATGGTCATGATGAAAAG GCTACTTCTTCAGGAAACAGCTATGGGAGCTTGGAGACTAACTATTCCAAGAGAAGAAAATATGATGTTGAGCCTAAGAATTTAACTGATGAAAAACCTG TAGGTACTGAAAAGTCGAGTGTTTCAAAAGTTGCACCTTTGCCAGAGGGCATACAATGGGCAACAAAGGAGCTCTTAGAGTTTGTTGCCCATGTGAGAAA CGGGGACACATCTTTTCTATCTCAGCTTGATGTGCAGGCTCTTTTGCTAGACTACATTAAAAGAAACAATCTTAGTGATTCTCGCCGAAAAAGTCAGATT CTTTGTGATACAAGACTAATAAACCTCTTTGGGAAAACACGTGTCGGTCATATTGAGATGCTGAAGATTCTTAAAAACCACTTCCTCGTGAAAGAAAATC CCCCGTGTGATGAATCTGTTAGGGTAGACATAGCTGCTGCTGCTGCCGCGGGTAGCTGCGCTGATCCTTATGTAGGTATCGGTAACGGCATTGTGGTTAA CAATGATAGAAGGCGTAAGACGCGCAAAAGGATGGATGAGAAAGTTACTCAGTTCAATCCCAATCCAGATGAATATGCAGCAATTGATGTTCACAATATC AATTTGTTGTACTTGAAGCGTAGTTCGATGGAGAATCTTGTGATTGATGCTGATACGTTTCACGAGAAAGTTGTTGGGTCATTTGTACGTATTAGGATTC CTTGTGGCGATCATCGACAAGATGTGCACCGGCTCGTTCAAGTTGTAGGGACTGGCAAGGCAGCTCAATCATATAAGCTTGGCATAAGAATAACTGATAT AATGCTTCAAATAATGAACTTAGACAAGAAGGAAGTTGTGTCAATCGATGGAATCTCCGACCAAGATTTCTCTGAGGAAGAATGCAAGCGTCTAAGACTG AGTGTAGGATCAGGCCTCATAAAGCTTATGAAGGTGGGTGCAATCCAGGAGAAAGCAAAGGCACTTCATTCTGTCAAAGTGACCGATTTCCTGGAAGCAG AAATAGCACAGCTTACTCATCTCCGTGATCGAGCTAGTGAGAAAAGACAGCGCAAGAAATATCCTTACATACAATGGCTGGAATGTACGGAGAAATTGGA GATTTTGCGGTCAGTTGAGGAACGGCAGCGGAGGTTGCATGAGGTCCCCATCGTTCATTCTGATCCAAATATTGGTTTCAGGTCATCCAGCCATGGACAA AATAGTCCTGCAGCGGTGCCTACTGAACCTATCTCTGCAGCTGCCCCTGTGATGCATTATCCTCCTCCAACAACCGGTGTGGTACCCCTTAATGATGAAG AGAGACTTTGGCATTATCGTGATCCATTTGGAACGGTTCAAGGGCCCTTCCCTATGATGCAGCTGAGAAGATGGAGTACAAGTGGGCTATTCCCACTGGA TCTGAGAGTATGGATGATGAATGGGAAGGAGGAAGAGTCTATTCTCTTGACTGATGCTTTACTAGGGTTGTTCCGTAGAGAGCCTCTGTTGCCTGCAAAT AACCATATGCCTCCCCTGGAAGTAACAACTGATTGTAGTGATAAAGATAAGATGTGGAATCGTGTGTTAAGTCAGGATAAATCAACAAACCAGATGCCTC CGCAGGAAGTAATCACTGATTGTGATGATAAAGATAAGAATTTGAACCTTCGTCAGGATACTTCAAAAAACCATATGCCTCCACAGGAAGTAATCACTGA TTGCAGTGATAAAGATAAGAAGTGGAACCCTGCGTCAAGTCAGGATACTTCGAAGAACTATATCCCTCCCCAGGAAGTAATAAATGACTGCAGTGATAAA GAGAAGAAGTGGAACAGTTCGTCAAGTCAGGATACTTCGACAAATCACATGGATAAGAATAAAGATGATCAAAATGGGCCATCTGAGAGAAATGATTTAA GCAGCATGGATGTTGGTAATGATGAAGTAAGGAGTAATGAGCTGGGTTCTCGTTCGTCCAGGTTGACCATGTTAGTGGATCTTGTCATTGGCAGTAATGA ACTAGACCAAAAATCCGAGCAGCCCTGCGAATTGTCCAAGAACGTTAAGTCTGGTGTCAGCCAGTCTCAAATTTGTGATTCAGTTGCTTCACCTTCTGCT TCTGCTAAAGAGCGTGATGCCGAGTCGTTGCAGGTGGCACAAGTTGTTGAAGAGGAGAATAGGAGTACTAGTGTTAATGATGTAAAGAGAAGTCCCAAGG AGCAAACCGTTGTTGAAGAGGGTGATGAAAAGAAAGGAAAAAGTGAAGGTTGTTCCAGCCAGTCGTCTGGACAGAGTTGGCACTCTACACATATGAACAT CTCGTATGGATGGGATCTGAACTCTACTTTCCCTTCTATGGTCAATTCAAACGGGACGGTAAAGAATGAGCAGGAAGTTGATTTCTCTGAGATAGGAACT TCATTGCCAAAGCAAAGCAATGAGGACTCAAAAGGTCCAAGCGTTGGCGAAAGCAAACACTCAGTCTCTTGCAATGTACCCATAATTGATGCAGGGCCTA GCTGGAGCACTACTTCAAGTTTAGTTGCTGGGGTACGGCTTCCTGACGTGGCTGCTGAATGGACAAGATATTCCTCTCCTGCAAAACCTTCCGTCGAGGA CTGGGGTTCCAATCTTGTGTCCGCATCGTCCTTGAGGCCACCTAATGGTTCGAGTGATCACGGTACCATACCGACTTCAGGAGCTGGTGAACTGAGACAT ACTTCACCGTCGATTGATGCAGGAGGATGGCAGGCAATGGTGTCTGAACCCAATGAGTTCTCTTTAGTCGATGAATCTGTTTCAGATCTTTTGGCTGAAG TTGAGGCGATGGAGTCTCTTGGTGGTTTGCCGTCCCCTACTTCAAAACTGAGTTGCGTCGGAGATTTGATGCACGTTTCGGACAATGACTGCTTTAGTCC CGTCGAGGATTTCAGTCCTGCGGCTGTTCATGGGAGGAGCGATGCATTGAGCTCCACTGGGGATATACAAATGCCAGGTCAAATATCTGTAGCGGAGGAA CAACTCGGCCTATCTATCATGCCTTCTCAGCCAATAGTACCGAGAGATTCACTCGAGAAAACCCAGAAGCCTCCCCAGTTGACAGTAACTGAGCCATTCC ACATATCTCTCATGCTTTCTCAGCCACTTGTAACAAGTAAACCCCAGAGTGCTACGGTTCCGACCCCACATCATCGTCAATCACAGGCAGAAGGGTCTTT CGGTATAACACGTACCGATGTTCTTGATTCTCAGAAGAGCAGCTCCAATGGCCACTCGAGCAACGAGGTGGAGAGAGAGAGACCACACAGTGTGAAATCG AACCGGTGGGAAGGGAGTTCTGAAACACAGAATCATCACCAGTCAAGTTCAAAACAACCAAAGCTGGAGTTAGACATCCACCTGCCATTTGGCTCGAATA CGAGCCGTCATGAAGTGGAAGCAAAGTCAGACGTCCAGTTTCATGCCCCGGCCTCGGTAGATTTGAGACTAGGGAACTCAAGAGGGCAGCGTTCAATTCT TGGGATAGCACCTGGTATTGCTGCTCAAGGAAATACTAGCATTCATTCAGGCAGTACTGGTCACAGCTCAGTCAAGAAACAAGCTAGCCAATACCCTGCA GCTACTGCAGCAGGGATTCCCAGTCTGCTGGGAAGTCCTAGGCATGGCGGCGACAAACATTCTGGGTCGAGAGATCACCGGAGCCATCATCAGAGCAGTA GAGATTCGGGTTATGGTAGAGAAAGATCCACGTGGAATAGCAGCAGCAGGCAGTCATCTCATGGAGGTCACGGAGGTGGCGGCTCTTTCAAAGCGGCGCC AAAAGGGCCGAGAGTGTGCAAGTTCTATGAAAACGGGTATTGCAAGAAGGGAGCATCTTGTAGTTTTTGGCATCCGTCATGA
AA sequence Show only first row Show all	>Lus10014271 pacid=23164756 polypeptide=Lus10014271 locus=Lus10014271.g ID=Lus10014271.BGIv1.0 annot-version=v1.0 MEQQQQQHQVSRIWKGEGEQSQRGGVFDSLLRGVGAEDMTIDQCEAIREMDHSQLIGAPVAVSSDVVAKVDSVAIVDVRVGNAVAAVPEISTVKRRRGRP PRNQGKVAPPPPKAMEEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDDAFFQSKAKWNCGWHICSSCERASHFMCYTCTYSLCKGCTKDAAYLCVRG NKGFCRQCMKMIKLIEKVPLENGEQVQVDFDDKGSWEYLFKVYWVCLKEGLSLTVDEILKAKNPWNVDELPKAKSPWKVPAAVDPVSESSGELYYGHDEK ATSSGNSYGSLETNYSKRRKYDVEPKNLTDEKPVGTEKSSVSKVAPLPEGIQWATKELLEFVAHVRNGDTSFLSQLDVQALLLDYIKRNNLSDSRRKSQI LCDTRLINLFGKTRVGHIEMLKILKNHFLVKENPPCDESVRVDIAAAAAAGSCADPYVGIGNGIVVNNDRRRKTRKRMDEKVTQFNPNPDEYAAIDVHNI NLLYLKRSSMENLVIDADTFHEKVVGSFVRIRIPCGDHRQDVHRLVQVVGTGKAAQSYKLGIRITDIMLQIMNLDKKEVVSIDGISDQDFSEEECKRLRL SVGSGLIKLMKVGAIQEKAKALHSVKVTDFLEAEIAQLTHLRDRASEKRQRKKYPYIQWLECTEKLEILRSVEERQRRLHEVPIVHSDPNIGFRSSSHGQ NSPAAVPTEPISAAAPVMHYPPPTTGVVPLNDEERLWHYRDPFGTVQGPFPMMQLRRWSTSGLFPLDLRVWMMNGKEEESILLTDALLGLFRREPLLPAN NHMPPLEVTTDCSDKDKMWNRVLSQDKSTNQMPPQEVITDCDDKDKNLNLRQDTSKNHMPPQEVITDCSDKDKKWNPASSQDTSKNYIPPQEVINDCSDK EKKWNSSSSQDTSTNHMDKNKDDQNGPSERNDLSSMDVGNDEVRSNELGSRSSRLTMLVDLVIGSNELDQKSEQPCELSKNVKSGVSQSQICDSVASPSA SAKERDAESLQVAQVVEEENRSTSVNDVKRSPKEQTVVEEGDEKKGKSEGCSSQSSGQSWHSTHMNISYGWDLNSTFPSMVNSNGTVKNEQEVDFSEIGT SLPKQSNEDSKGPSVGESKHSVSCNVPIIDAGPSWSTTSSLVAGVRLPDVAAEWTRYSSPAKPSVEDWGSNLVSASSLRPPNGSSDHGTIPTSGAGELRH TSPSIDAGGWQAMVSEPNEFSLVDESVSDLLAEVEAMESLGGLPSPTSKLSCVGDLMHVSDNDCFSPVEDFSPAAVHGRSDALSSTGDIQMPGQISVAEE QLGLSIMPSQPIVPRDSLEKTQKPPQLTVTEPFHISLMLSQPLVTSKPQSATVPTPHHRQSQAEGSFGITRTDVLDSQKSSSNGHSSNEVERERPHSVKS NRWEGSSETQNHHQSSSKQPKLELDIHLPFGSNTSRHEVEAKSDVQFHAPASVDLRLGNSRGQRSILGIAPGIAAQGNTSIHSGSTGHSSVKKQASQYPA ATAAGIPSLLGSPRHGGDKHSGSRDHRSHHQSSRDSGYGRERSTWNSSSRQSSHGGHGGGGSFKAAPKGPRVCKFYENGYCKKGASCSFWHPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014271 [exp]	0	1
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025973 [exp]	1.0	0.9468
AT1G21610			wound-responsive family protei...		Lus10028676 [exp]	4.0	0.8848
AT3G26990			ENTH/VHS family protein (.1)		Lus10005665 [exp]	4.2	0.8680
AT3G10650		AtNUP1	unknown protein		Lus10028861 [exp]	5.0	0.8750
AT3G17900			unknown protein		Lus10036712 [exp]	7.7	0.8514
AT3G10650		AtNUP1	unknown protein		Lus10008959 [exp]	8.5	0.8710
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10015446 [exp]	8.8	0.8783
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10021457 [exp]	9.5	0.8733
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	10.0	0.8754
AT5G49930		EMB1441	embryo defective 1441, zinc kn...		Lus10017099 [exp]	12.6	0.8192

Compare expression of checked genes

Lus10014271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.