Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18090 389 / 5e-119 PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein (.1) AT3G51120 379 / 2e-111 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) AT2G16485 333 / 5e-94 nucleic acid binding;zinc ion binding;DNA binding (.1) AT5G63700 149 / 3e-37 zinc ion binding;DNA binding (.1) AT5G08430 61 / 5e-09 SWIB/MDM2 domain;Plus-3;GYF (.1) AT2G35605 47 / 4e-06 SWIB/MDM2 domain superfamily protein (.1) AT4G34290 47 / 1e-05 SWIB/MDM2 domain superfamily protein (.1) AT2G14880 45 / 4e-05 SWIB/MDM2 domain superfamily protein (.1) AT4G26810 44 / 6e-05 SWIB/MDM2 domain superfamily protein (.1.2) AT1G49520 46 / 0.0001 SWIB complex BAF60b domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025974 [exp] 2013 / 0 AT3G51120 395 / 3e-120 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10014271 [exp] 734 / 0 AT3G51120 644 / 0.0 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10025973 [exp] 699 / 0 AT3G51120 487 / 2e-148 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10018078 [exp] 338 / 1e-95 AT2G16485 986 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Lus10042072 [exp] 338 / 1e-95 AT2G16485 1007 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Lus10019640 [exp] 45 / 0.0002 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10009333 [exp] 45 / 0.0002 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1) Lus10027738 [exp] 46 / 0.0003 AT2G36720 821 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10002106 [exp] 41 / 0.0003 AT4G34290 109 / 2e-32 SWIB/MDM2 domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G016000 [exp] 501 / 2e-153 AT2G16485 709 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.005G117300 [exp] 496 / 5e-152 AT2G16485 695 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.004G161700 [exp] 362 / 5e-104 AT2G16485 1050 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.009G123800 [exp] 357 / 3e-102 AT2G16485 1064 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.001G305900 [exp] 163 / 4e-42 AT5G63700 406 / 2e-135 zinc ion binding;DNA binding (.1) Potri.011G078050 [exp] 147 / 1e-35 AT5G63700 368 / 3e-116 zinc ion binding;DNA binding (.1) Potri.004G133600 [exp] 56 / 2e-07 AT5G08430 405 / 3e-135 SWIB/MDM2 domain;Plus-3;GYF (.1) Potri.005G134500 [exp] 45 / 0.0002 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1) Potri.006G120200 [exp] 45 / 0.0003 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.001G297400 [exp] 43 / 0.0003 AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02201 [flax] [poplar] SWIB SWIB/MDM2 domain CL0673 [flax] [poplar] GYF PF02213 [flax] [poplar] GYF GYF domain
Representative CDS sequence Show only first row Show all	>Lus10014272 pacid=23164718 polypeptide=Lus10014272 locus=Lus10014272.g ID=Lus10014272.BGIv1.0 annot-version=v1.0 ATGGAGCAGCAGCAGCAGCAGGTGGCCAGGACGTGGAAAGGGGAAGGAGAGCAGAATCAGCGGGGTGGTGTTTTCGACAGTTTGCTACGGGGAGTTGGAG CTGAGAACATGACCATCGATCAATGCGAGGCGATTCGGAAATTGGACGACGACTCTCACCTAATCGGAGCCCCTGTCACGGTCTCAGCAGACGTTGCTGC TAAAGTAGAGTCGGCGGTTACTGTGGACGTCCAAGTTGGAAATGCGGGGGCTGTTGTTCCTGATATCAGTGTGGTGAAGAAGAGGCGTGGTAGGCCTCCG CGTAATCAGGCGAAAGTAGCGCCTCGGACGACGACGAAGGAGATGGAGGAAGAAGATGTTTGTTTCATTTGCTTCGACGGTGGCAGCCTAGTGCTATGTG ATCGCCGGGGCTGCCCTAAAGCATACCACCCAGCTTGTATCAAGAGGGATGACGCTTTTTTCCAATCAAACGCCAAATGGAACTGCGGGTGGCATATTTG TAGCAGTTGCGAGAAGGCTTCTCATTTCATGTGCTACACATGCCCATACTCTCTTTGCAAAGGGTGCGCCAAATTTGCTGATTACTTATGCGTGAGAGGA AATAAAGGTTTTTGTCGATCGTGCATGAAAATGATAATGCTGATAGAAAATGTACCAGCTGAGAATAGTGAGCAGGTTCAAGTGGACTTTGATGACAACA CTAGCTGGGAGTATCTTTTCAAAGTGTATTGGGTTTGCCTTAAAGAAAGCTTGTTATTGACAGTAGAAGAAATACTAAAGTCTAAAAGTTCCGGGCAAGT CGATGAATTACCTAAAACTAGAAGCCCCTGGAAGGTTTCTGCTGTTATGGATCCTGTATCAGAATCTTCAAGTGAACTTTGTTATGGTCGTGATGACAAG GCTACTTCTTCAAGCACCAGCTATGGAAGCCTGGATACGAACTATTGTAAGAGAAGAAAATATGATGTGGAACCTAAGGTTTTAAGTGATGAAGCATCTG TAGGTACTGAAAAGTCGAGTGTTTCTAAAGTTGCACCTATGCCGGAGGGCACGAAATGGGCAACAAAGGAGCTCTTAGAGTTGGTTGCACATGTGAGAAA TGGGGATGCATCTTTTCTATGTCAGTCTGAAGTGCAGGTTCTTTTGTTAGAATACATTAGAAGAAACAATCTTCGTGATCCTCGCAGAAAATGTCAGATT CTTTGTGATACAAGACTAATAAACCTCTTTGGGAAAACACGTGTTGGTCATATTGAGATGGTGAAGCTTCTTGAATATCACTTGCTTGTGAAAGAAAACC CCTCGCATGATGAATCTGTTATGGTAGACATAGCTGTTGCTGATGCTGGTACTGCTGCTGCAGAGCGTAGCTGCACTGAGGTTCCCTTTGCCCATTCTGA TCCAAATATGGGTCCACATTGCAAGTCGGAAGGAAATATCAAAGAGGCCAAAAATCATATAACATTGAACCATGAAGGAATGGGTTCATCCAGCCATGGA CAAAATATATCTGCAGTTTCCTCGGTCATGCATTTTCCTCCTCCAACTACCGAAGGAGTGATATCTAATAATGATGAGTTACAGCGACTTTGGCATTATC GTGATCCATTTGGAACTGTTCAAGGGCCCTTTCCTATGGTGCAACTGAGGAATTGGAGTACAAGTGGGCTATTCCCCTTGGATCTGAGAGTATGGATGAT GAATGGAAAGGAGGAAGAGTCTGTTCTTTTGACTGATGCTTTACTTAGGTCGTTCCATAAGGAAATAATAACTGATCGTAGTGATAAAGATAGTAAGTGG AATTGTGCATCAAGTCAGGATACTGCTACAACTCATATGGACGAGAATATAGTCCATCAAAATGGGCAGCCCGAGAAAAAAGATTCAAGTAGCACGGATG TTGGTAATGGTGAAGTTACCAGTAGTGAAGTGCTAGGTTCTCGCTCTTCCAGGTTGACCATGTTGTTGGATCTTGTCATTGGGAGTAATGAACTAGATAA AAATTCTGAGCAGCTCTGTGACTTGTCCAAAAATAGCAACTCTGGTGGCAATCAATCTCAAATTTATGATCCAGTTGCATCACCTTCTACTTCTGCTAAA GTGTGTGACGTTGAGATGCTGCATGTGACACCAGTCGGTGGAGAGGAGAATAAGAGTACCAGTGTTAATGATGTAATGAGAATCCCCCATAGGACAAATC CTAAGGAGCAAACCGTTGGTGAAGACGGTGATGGAAATGAAGTAAAAACTGAAGGTTGTTCCAGCCAATCTTCTGGGCAGAGTTGGCATCCTACACACAT GAACATCTCGTATGGATGGGATCTCAACTCTACTTTTCCGTCAATGGTTAATTCAAATGGGGCAGTAAAGAATGAACAGGAAGTTAGTTTCTCGGAGGTA AAGCATGACAATGGGGAATCAAAAGGTCAAAGTGGCGAACAAAAATACTCTGTTTCTTGCAATGTATCCATCATTGATGCAGGGCCCAGCTGGAGCACTA CTTCAAGTTTAGTTGGTGGAGCACGGCTTCCTGATGTTGCTGCTGAATGGACAGGATACTCCTCTGTTCCTGCAAAGCCTTCTGTTGAGGACTGGGGTTC CAATCTTGTCTCTGCATCATCCTTCAGGCCACCTAATGGCTCAAGTGGTCATGCTTCCATACCAACTTCAGGAGCTGGTGAACTGAGACACAGTTCACTG TCGCATGGATCAATTGATACAACAGGATGGCAGGCAATGGTCTCTGAACCCAACGATTTCTCTTTAGTTGATGAATCTGTTTCAGATCTTTTGGCTGAAG TTGAGGCAATGGAGTCTCTCGGTGGATTTCTGTCCCCTACTTCCAAATTGAGCTGCGTTGGAGATTTGATGCATGTTTCAGATAATGATTGCTTTAGTCC TGTTGAGAATTTCAGCCCTGCTCTTCCTCGTGGGAGAAGTGCTGCATTGAGCTCCGCTGGGGATATAGAAATGCCATCTCGATTATCTGTTGCAGAGGAA CAACTTGACCTATCTATCATGCCTTCTCAGCCAATTGTACCGAGGGATTCCCTTGAGAAAACACAAAAGCCTCCCCAGTTGACATCAGAAGGCCCTATTG GCAATATACGTACTGATGTTCGTGAAGCTCCAAAGAGCTCCAATGGACACCAGAGCAATGAGTTGGAGAGAGGTTCAGGACTGCACAATGTTACAGCTAA CTGCTTCCGTCTGCCACGAATGTCAGACGTCCAGTTGCCTGCCCCAGCGTTGGTAGATTTGAGATTAGGGAACTCCAGAGGGGGTTCAATTATTGGCATA GCACCTGGTATTGCTTTTCAAGGAAATACAAGCACTCGTCCAGGTACCAGTCACGGCTCAGTTAAGAAGCAAAGTACCCAACACTCAACCACTTCCACAG GGCATTCAACTACCAGCACTGGGAATCCCAGTCTGTTTGGAAACCAGCCGAAGCATCAAAGTAGCAGAGGTTCAGGTTTTGGTAGGGAAAGGTCAGTGTG GAACGGCAATGGCAGGCAGTCTCCTCATGGAGGAGACACTTTCAGATCACCGCCCAAAGGGCAGCGAGTGTGTAAATTTTACGAAAACGGGTGTTGCAAG AAGGGAGCGTCGTGTAGTTTTTGGCACCCATCATGA
AA sequence Show only first row Show all	>Lus10014272 pacid=23164718 polypeptide=Lus10014272 locus=Lus10014272.g ID=Lus10014272.BGIv1.0 annot-version=v1.0 MEQQQQQVARTWKGEGEQNQRGGVFDSLLRGVGAENMTIDQCEAIRKLDDDSHLIGAPVTVSADVAAKVESAVTVDVQVGNAGAVVPDISVVKKRRGRPP RNQAKVAPRTTTKEMEEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDDAFFQSNAKWNCGWHICSSCEKASHFMCYTCPYSLCKGCAKFADYLCVRG NKGFCRSCMKMIMLIENVPAENSEQVQVDFDDNTSWEYLFKVYWVCLKESLLLTVEEILKSKSSGQVDELPKTRSPWKVSAVMDPVSESSSELCYGRDDK ATSSSTSYGSLDTNYCKRRKYDVEPKVLSDEASVGTEKSSVSKVAPMPEGTKWATKELLELVAHVRNGDASFLCQSEVQVLLLEYIRRNNLRDPRRKCQI LCDTRLINLFGKTRVGHIEMVKLLEYHLLVKENPSHDESVMVDIAVADAGTAAAERSCTEVPFAHSDPNMGPHCKSEGNIKEAKNHITLNHEGMGSSSHG QNISAVSSVMHFPPPTTEGVISNNDELQRLWHYRDPFGTVQGPFPMVQLRNWSTSGLFPLDLRVWMMNGKEEESVLLTDALLRSFHKEIITDRSDKDSKW NCASSQDTATTHMDENIVHQNGQPEKKDSSSTDVGNGEVTSSEVLGSRSSRLTMLLDLVIGSNELDKNSEQLCDLSKNSNSGGNQSQIYDPVASPSTSAK VCDVEMLHVTPVGGEENKSTSVNDVMRIPHRTNPKEQTVGEDGDGNEVKTEGCSSQSSGQSWHPTHMNISYGWDLNSTFPSMVNSNGAVKNEQEVSFSEV KHDNGESKGQSGEQKYSVSCNVSIIDAGPSWSTTSSLVGGARLPDVAAEWTGYSSVPAKPSVEDWGSNLVSASSFRPPNGSSGHASIPTSGAGELRHSSL SHGSIDTTGWQAMVSEPNDFSLVDESVSDLLAEVEAMESLGGFLSPTSKLSCVGDLMHVSDNDCFSPVENFSPALPRGRSAALSSAGDIEMPSRLSVAEE QLDLSIMPSQPIVPRDSLEKTQKPPQLTSEGPIGNIRTDVREAPKSSNGHQSNELERGSGLHNVTANCFRLPRMSDVQLPAPALVDLRLGNSRGGSIIGI APGIAFQGNTSTRPGTSHGSVKKQSTQHSTTSTGHSTTSTGNPSLFGNQPKHQSSRGSGFGRERSVWNGNGRQSPHGGDTFRSPPKGQRVCKFYENGCCK KGASCSFWHPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014272 [exp]	0	1
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025974 [exp]	4.1	0.8951
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10006777 [exp]	4.6	0.8749
AT5G17680			disease resistance protein (TI...		Lus10043227 [exp]	5.5	0.8625
AT4G17140			pleckstrin homology (PH) domai...		Lus10003381 [exp]	6.6	0.8641
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10012390 [exp]	7.1	0.8610
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10012235 [exp]	8.1	0.8531
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10011917 [exp]	9.7	0.8636
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10016847 [exp]	11.4	0.8858
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10022795 [exp]	13.3	0.8027
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10017050 [exp]	14.4	0.8619

Compare expression of checked genes

Lus10014272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.