Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36220 692 / 0 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1) AT5G04330 557 / 0 Cytochrome P450 superfamily protein (.1) AT5G07990 311 / 3e-100 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G26310 305 / 9e-98 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26300 296 / 9e-95 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26320 292 / 5e-93 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT1G01280 291 / 1e-92 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT3G48280 291 / 1e-92 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G26210 291 / 1e-92 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT3G48320 283 / 7e-90 CYP71A21 "cytochrome P450, family 71, subfamily A, polypeptide 21", cytochrome P450, family 71, subfamily A, polypeptide 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025975 [exp] 892 / 0 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10028361 [exp] 755 / 0 AT4G36220 725 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10022303 [exp] 709 / 0 AT4G36220 680 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10041511 [exp] 709 / 0 AT4G36220 687 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10041811 [exp] 701 / 0 AT4G36220 667 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10034300 [exp] 697 / 0 AT4G36220 668 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10012582 [exp] 595 / 0 AT4G36220 578 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10000326 [exp] 543 / 0 AT4G36220 523 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10016601 [exp] 340 / 3e-111 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G117500 [exp] 744 / 0 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.007G016400 [exp] 730 / 0 AT4G36220 761 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.009G123600 [exp] 635 / 0 AT4G36220 672 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.006G141400 [exp] 339 / 6e-111 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.008G223500 [exp] 337 / 5e-110 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084200 [exp] 336 / 5e-110 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G085000 [exp] 337 / 1e-109 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.015G085800 [exp] 335 / 2e-109 AT3G48270 479 / 7e-166 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.007G084700 [exp] 334 / 2e-109 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G082900 [exp] 333 / 5e-109 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10014273 pacid=23164687 polypeptide=Lus10014273 locus=Lus10014273.g ID=Lus10014273.BGIv1.0 annot-version=v1.0 ATGGATCCAATCCTCCTAGCTTTCCTATTCCTAATCCCATTCATCTTCCTCTTCCCGCTCCTTTGTCGCCGCTCCCGCCGCCTCCCACTGCCGCCGGGTC CAAAGGGCCTCCCCATAATAGGCAACATGCTCATGATGGACCAGCTGACCCACCGTGGCCTGGCCAACCTGGCCAAGCAATACGGCGCCGGATTGTTCCA CCTCAAGATGGGGAACCTCCACATGGTCACAGTCTCCTCCGCCGACGTGGCCCGCCAGGTGCTCCAAGTCCACGACAACATCTTCGCCAACCGCCCCGCG AACATCGCGATCAGCTACCTCACCTACGACCGGTCCGACATGGCGTTCGCCCACTACGGCCCCTTCTGGCGCCAGATGAGGAAGATCAGCGTCATGAAGC TCTTCAGCCGCAAGCGGGCCGAGTCGTGGGAGTCGGGGGGGGGGGGGTGTGCGACGGAGGACGAGGTTGACTGCATGGTCAAGACCGTGGCGGTTAACTA CGGGAAGGCTATTAACGTCGGGGAGCTTATTTTCACTTTGACCATGAATATCACGTACAGGGCGGCGTTCGGGTCCAAGAACGAAGGGCAGGACGAGTTT ATAAAAATACTTCAGGAGTTCTCGAAGCTGTTTGGGGCTTTCAACATTGCCGATTTTATCCCTGGACTTGGTTGGATGGACCCGAGTGGTTTGAATACTC GGCTCGTCAACGCTCGCAAAGCGCTCGACAAGTTTATTGACAGAATCGTTGACCAGCATCTCGAGAAGAAGAGGCTAAACGGCGGCGTTTGTCAGGACGA GGATTCCAACCCGGATATGGTGGACGAGTTGCTTGTGTTTTTTAATGAAGATTCTTCCGGCTCGGTTACCGATACTTCCGAATCTATTAAGCTCACCAAG GACAACATTAAAGCGATCATCATGGATGTGATGTTCGGTGGGACCGAGACGGTGGCGTCTGCAATCGAGTGGGCCATGGCCGAGCTAATGAAGAGTCCGG ACGATTTACGACGCATCCAGGAGGAGCTAGCCGACGTGGTGGGGCTGGACCGTCACGTTGAAGAGAGCGACTTCGACAAACTCACTTTCCTGAAGTGCAC CATCAAGGAGACCCTCCGCCTTCACCCGCCGATTCCTCTCCTCCTCCACGAGGCGGCAGAGGACGCTGAGGTTTCGGGTTACTTCGTCCCGAAGAAGTCT CGGGTTATGATCAACGCATTCGCCATCGGGCGGGACCCGAACTCGTGGGCCAACCCGGACGATTTCAAGCCGGCCAGGTTCTTGGAGGAAGGGATGCCGG ACTTCAAAGGGAACAACTTTGAATTCCTACCGTTTGGGTCGGGCCGGAGGTCCTGCCCCGGGATGCAGTTGGGTCTGTACGCGCTGGACCTCGGGGTGGC TCACTTACTTCACTGTTTCAAGTGGGAGTTGCCCGATGGGATGAAGCCGAGCGATTTGGACATGAGTGATGTTTTCGGACTCACCGCTCCACGGGCGACC CGATTGGTGGCGGTTCCCACCCCGAGATTGACGTGCCCGCTCTGA
AA sequence Show only first row Show all	>Lus10014273 pacid=23164687 polypeptide=Lus10014273 locus=Lus10014273.g ID=Lus10014273.BGIv1.0 annot-version=v1.0 MDPILLAFLFLIPFIFLFPLLCRRSRRLPLPPGPKGLPIIGNMLMMDQLTHRGLANLAKQYGAGLFHLKMGNLHMVTVSSADVARQVLQVHDNIFANRPA NIAISYLTYDRSDMAFAHYGPFWRQMRKISVMKLFSRKRAESWESGGGGCATEDEVDCMVKTVAVNYGKAINVGELIFTLTMNITYRAAFGSKNEGQDEF IKILQEFSKLFGAFNIADFIPGLGWMDPSGLNTRLVNARKALDKFIDRIVDQHLEKKRLNGGVCQDEDSNPDMVDELLVFFNEDSSGSVTDTSESIKLTK DNIKAIIMDVMFGGTETVASAIEWAMAELMKSPDDLRRIQEELADVVGLDRHVEESDFDKLTFLKCTIKETLRLHPPIPLLLHEAAEDAEVSGYFVPKKS RVMINAFAIGRDPNSWANPDDFKPARFLEEGMPDFKGNNFEFLPFGSGRRSCPGMQLGLYALDLGVAHLLHCFKWELPDGMKPSDLDMSDVFGLTAPRAT RLVAVPTPRLTCPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10014273 [exp]	0	1
AT2G32190			unknown protein		Lus10010460 [exp]	1.7	0.9285
AT1G76360			Protein kinase superfamily pro...		Lus10013223 [exp]	2.4	0.9272
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10033387 [exp]	7.5	0.8531
AT5G66170		STR18	sulfurtransferase 18 (.1.2.3)		Lus10041895 [exp]	7.7	0.8788
AT4G00720		ASKTHETA, ATSK3...	SHAGGY-LIKE PROTEIN KINASE THE...		Lus10018850 [exp]	8.8	0.8996
AT3G09760			RING/U-box superfamily protein...		Lus10026501 [exp]	9.8	0.8765
AT5G66170		STR18	sulfurtransferase 18 (.1.2.3)		Lus10028442 [exp]	12.7	0.8593
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10023789 [exp]	17.3	0.8656
AT5G52430			hydroxyproline-rich glycoprote...		Lus10032276 [exp]	19.0	0.8928
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10017489 [exp]	23.8	0.8774

Compare expression of checked genes

Lus10014273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.