Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51070 915 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G64030 838 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29470 806 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 804 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G40280 576 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 559 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19430 530 / 7e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 500 / 7e-167 Putative methyltransferase family protein (.1) AT2G39750 484 / 2e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G77260 473 / 1e-156 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025976 [exp] 1298 / 0 AT3G51070 964 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028354 [exp] 1116 / 0 AT3G51070 1051 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041804 [exp] 1096 / 0 AT3G51070 1034 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042767 [exp] 833 / 0 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029736 [exp] 832 / 0 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10018954 [exp] 828 / 0 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028650 [exp] 821 / 0 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020894 [exp] 800 / 0 AT5G64030 1019 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019644 [exp] 772 / 0 AT5G64030 922 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G017400 [exp] 974 / 0 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G118100 [exp] 971 / 0 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G104000 [exp] 850 / 0 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G065200 [exp] 846 / 0 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G184500 [exp] 835 / 0 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G075800 [exp] 831 / 0 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G185000 [exp] 589 / 0 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G260600 [exp] 534 / 3e-179 AT1G19430 953 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 482 / 4e-160 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 482 / 4e-160 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10014274 pacid=23164708 polypeptide=Lus10014274 locus=Lus10014274.g ID=Lus10014274.BGIv1.0 annot-version=v1.0 ATGGCAATCGGACGGCCATCTCGCTCCGGCAAGCGGAGCTCTTCCTCATCTGCTTCATACACCACCACCATTACAACCGTCCTCTTCATCACACTATGCG TTCTCGCCGTCTGGATGCTCACTTCAACCTCTCTGCAGGGTCCCACACAAACCGCCACTCTCGCCCGCAAGGCCGCCAACGCCATGGCCGCCTCCTCCGC GACCGTGGCCGACATAGTGCTCGATCCGTCTCAAAATCTCGAGATTTCTGCTAGTACTACCGGAAAGAATAAGCAATCCGTTTTCGAGGATAACCCTGGG GATCTCCCCGTCGATGCCATCAAATCGGACGAGAATAACGACAACAACCATCAGGCTTCCGCGGAGGAGAAGGAGAAGCACACTCAGATCTCCGAGGAGA GCACGATGACCACCGCCCAGAGCGTTAATCAACAGGTGATTGTCGAGGAGACGACTTCGAGGAATAACGATAACGGCAAGAAAGAGATTGAATTACAACC TGTGGAGCAGTCGGATGTGGATTCGCAGCAGCAGCAGCAACACAATGCTGAATCTGAAACGAAATCTTTTGAGGAGCAGCAACAGCAGCAGAGAATGGAG GATGCTGGAATTCAGAATCCGGTTGAGGAGAAGCCTGAAAATAAGGTAACTGAGGAAGATCAGGCACAGAGGATGCAGCAACAACAGGAAATGCACGATG CTCAGAAGGCCGAAGTGACGGCCCATAAACAGCAGCAGATGGAGATGAAGTTCGACGTTGATGCTCATAGGCCAGTGGAGGTCATTACTCCAGAGGAAGA GCCGGATGGCACGTTGTTTTCAGGGGGTGGAGGAGCATCTTCATCATCATCAGAGATTCCCAAGGAGTCAAAGGAGTCGAAGAAATCATGGTCGACTCAG GCAAGCGAGTCCGAGAGCCAGAAGGAGAGGAGGAAAGATGATGATGATGAACCGGCCAAAGGTGAAGTTGAAGTGTGGAAGCTGTGTAATGTGACGGCCA CTACTGATTATATTCCCTGTTTGGATAACGAGAAGGCGTTGAAGAAACTAAGGACAACTGGACATTTTGAGCACCGAGAGAGGCATTGCCCTGAAGATCC TCCAACTTGCTTGGTTCCTCTTCCTGCTGGATACAAAAGGCCCATCCTATGGCCAAGTAGCAGAGACAAGATATGGTACCACAATGTCCCTCGCACAAAA TTGGCAGAAGTTAAGGGACATCAAAACTGGGTTAAGGTAACCGGTGAGTTCTTGACATTCCCTGGAGGTGGAACTCAGTTTATCCATGGAGCTCTCCATT ACATAGATTTCCTGCAGAGGGCAGTGCCGAAGATCGGATGGGGAAAGCATACCAGAGTGATTTTGGATGTTGGTTGCGGTGTAGCCAGTTTTGGTGGATA TATCTTTGAAAGAGATGTTCTTACCATGTCGTTTGCTCCCAAGGATGAACACGAAGCTCAAGTTCAGTTTGCGCTAGAGAGAGGCATTCCAGCGATATCT GCTGTGATGGGCTCTAAACGTTTGCCATTCCCAAGTGCTGTTTTTGATGCCATTCACTGTGCTCGATGCAGAGTCCCCTGGCATAACGAAGGAGGTCTCT TGCTCCTGGAATTGAATCGTCTTCTTCGTCCTGGAGGGTACTTTATTTGGTCAGCAACTCCTGTGTATCAAAAGCTCAAGGAAGATGTCGAAATTTGGCA AGCAATGTCTGCGTTGACTGTAAAAATGTGTTGGGAACTTGTGACAATCAAGGGAGACAAACTTAACAAGATTGGAGCTGCTATTTACAGCAAGCCCACA ACCAATGATTGTTATGATCAGAGGAAGAAAAATGAACCTCCAATGTGTGCAGATGATGATGATTCAAATGCTGCTTGGTCTGTCCCACTGCAGGCATGCA TGCACAGAGTACCTTCTGAGCCAAGCATCCGAGGGACAGAATGGCCAGATGATTGGCCTGCAAGATTACAGAGGCCTCCTTACTGGCTCAACAGCTCTCA AATGGGGATCTACGGTAAACCAGCACCCCAAGACTTCATAACAGATTATAAGCACTGGAAAAATCTGGTGACTAAGACGTATATGAAAGGACTGGGAATC AGCTGGGACGGCGTGAGAAATGTTATGGACATGAGAGCTGTGTATGGCGGTTTCGCAGCAGCTCTTAAAGATATGAAGGTTTGGGTGTTGAATGTGGTTA CTGTAGATTCTCCAGACACCCTTCCGATAATATACGAGAGAGGGCTGTTTGGGATCTACCATGACTGGTGTGAATCCTTCAGCACTTACCCTCGGACGTA TGATCTGGTTCATGCTGATCATCTTTTCTCAAAGTTGAAAACCAGGTGCAAACTTGTACCTGTAGTGGCAGAGGTTGACAGAATACTCAGACCGGGAGGT AAGTTCATCGTTCGAGACGAAACAAATACGATACAGGAAGTCGAGGGCATACTCAAGTCTCTGCATTGGGAGGTTACCTTGTCCAACAACCAAGAAGGTG TACTTAGTGCACAGAAAGGCGACTGGCGGCCGGAGACATTCGAAGCTTCTTCATGA
AA sequence Show only first row Show all	>Lus10014274 pacid=23164708 polypeptide=Lus10014274 locus=Lus10014274.g ID=Lus10014274.BGIv1.0 annot-version=v1.0 MAIGRPSRSGKRSSSSSASYTTTITTVLFITLCVLAVWMLTSTSLQGPTQTATLARKAANAMAASSATVADIVLDPSQNLEISASTTGKNKQSVFEDNPG DLPVDAIKSDENNDNNHQASAEEKEKHTQISEESTMTTAQSVNQQVIVEETTSRNNDNGKKEIELQPVEQSDVDSQQQQQHNAESETKSFEEQQQQQRME DAGIQNPVEEKPENKVTEEDQAQRMQQQQEMHDAQKAEVTAHKQQQMEMKFDVDAHRPVEVITPEEEPDGTLFSGGGGASSSSSEIPKESKESKKSWSTQ ASESESQKERRKDDDDEPAKGEVEVWKLCNVTATTDYIPCLDNEKALKKLRTTGHFEHRERHCPEDPPTCLVPLPAGYKRPILWPSSRDKIWYHNVPRTK LAEVKGHQNWVKVTGEFLTFPGGGTQFIHGALHYIDFLQRAVPKIGWGKHTRVILDVGCGVASFGGYIFERDVLTMSFAPKDEHEAQVQFALERGIPAIS AVMGSKRLPFPSAVFDAIHCARCRVPWHNEGGLLLLELNRLLRPGGYFIWSATPVYQKLKEDVEIWQAMSALTVKMCWELVTIKGDKLNKIGAAIYSKPT TNDCYDQRKKNEPPMCADDDDSNAAWSVPLQACMHRVPSEPSIRGTEWPDDWPARLQRPPYWLNSSQMGIYGKPAPQDFITDYKHWKNLVTKTYMKGLGI SWDGVRNVMDMRAVYGGFAAALKDMKVWVLNVVTVDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLVHADHLFSKLKTRCKLVPVVAEVDRILRPGG KFIVRDETNTIQEVEGILKSLHWEVTLSNNQEGVLSAQKGDWRPETFEASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10014274 [exp]	0	1
AT4G16807			unknown protein		Lus10000419 [exp]	5.2	0.8405
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10019247 [exp]	10.5	0.8372
AT3G21260		GLTP3	GLYCOLIPID TRANSFER PROTEIN 3,...		Lus10029765 [exp]	11.1	0.8755
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10028858 [exp]	22.4	0.8668
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10020024 [exp]	30.4	0.8428
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10038205 [exp]	38.7	0.8438
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10011141 [exp]	54.6	0.8123
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10020248 [exp]	57.1	0.8168
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10011578 [exp]	59.7	0.7704
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Lus10039670 [exp]	64.7	0.8124

Compare expression of checked genes

Lus10014274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.