Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51050 951 / 0 FG-GAP repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025977 [exp] 1131 / 0 AT3G51050 549 / 0.0 FG-GAP repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G118300 [exp] 1027 / 0 AT3G51050 1110 / 0.0 FG-GAP repeat-containing protein (.1) Potri.007G017600 [exp] 1019 / 0 AT3G51050 1107 / 0.0 FG-GAP repeat-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014275 pacid=23164714 polypeptide=Lus10014275 locus=Lus10014275.g ID=Lus10014275.BGIv1.0 annot-version=v1.0 ATGAGGAAGCGCGACTTGGCAATTCTTATGCTTTCGGCTTTTGCCATCTTCTTCTCCCTTCAGCACGAAGGAGATTTCTCGTTTCGAGAGGCGTGGTTCC ATCTTTCTGACGAGTATCCAATCAAGTACGATGGCGAACGGCTTCCTCCTCCTGTTGTAGCTGATCTGAATGGTGACGGGAGGAAAGAAGTCCTTGTTGC CACTCACGATGCCAAAATTCAGGTGTTGGAGCCTCATTCTAGGCGAGTGGATGAAGGGTTTAGTGAAGCAAGAGTGCTGGCGGAGGTTTCACTGTTGCCT GATAAAATAAGGGTTGCGTCTGGCAGACGAGCAGTGGCTATGGCAACTGGTGTTGTGGATAAGATTTATAAGCAAGGGCTGCCACTAAAGCAGGTCTTGG TGGTTGTTACTTCCGGGTGGTCGGTGATGTGCTTTGATCATAACCTTAAAAAGCTCTGGGAAACAAGTCTGCAGGAAGATTTTCCTCATAATGCTCACCA TAGGGAGATTTCAGTATCTATAAGTAATTATACGCTAAAGCATGGCGATGAAGGTTTGATCATAGTTGGTGGTAGGATGGAAGTGCAGCCACATATTCAC TGGGACCCATTTGAAGACATCGGCGCGGCTGAAAGAAGTGCAGAACAGCACAGAAGAAGCGCTACCGAGAAGGAGGTTTCAGAGAACTCTGGAACTACCA ATTTGCGCCATTTTGCTTTCTATGCATTCGCTGGTCGAACTGGTCAACTTCGATGGAGTAGAAAGAATGAGAATATTGAAGAGAAGGCTTCAGATGTGTC TCAGTTGATTCCACAACACAATTACAAGCTGGATGTGCATGCTCTTAATGCTCGTCAACCTGGAGAGAAAGTAGCTGGAAAAACTACAACTTACCCATTT CATAAGCCTGAGGAGAACAATCCGCCTGGAAAGGATTCTGCTAAGAAGATCTCAAATTTGATTGGGAAGGCTGCAACTTATGCTGGTTCTGCTAAATCTA AGAAGCAATTGAACTACATCCCAACCATAACCAACTACACTCAGCTATGGTGGGTTCCCAATGTGGTTGTTGCACATCAAAAGGAGGGGATAGAAGCTCT TCATTTAGCTTCTGGCCGTACCCTTTGTAAGCTCCATCTACAAGAAGGTGGTCTTCATGCTGATATTAACGGAGATGGCGTCCTTGATCATGTCCAGGCA TGTATATGTTCCTTTGATCTGTTTATGCTTTTTCGATTCGTTTCCCTTGCGTTGATCTGTTTGCACTGGTCTATTTATTTGCTTCCCTGTTTACTGGCTG TGGGTGGTAATGGAGCTGAGAAGACTGTTGTTACTGGATCAATGGAAGTGCTCCGTCCCTGCTGGGCTGTTGCGACCTCTGGGGTACCAGTGCGAGAGCA ACTCTTCAACGTTTCAATATGTCATCACACACTTTTGAATTTGTTCCAACATGGAGAGTTCTCTAGAAACTTCGGGCATGCTGCAGATGTATCGTCTTTA GAAGTAGCAGCCCCGATTCTCATTCCGAGAAGTGACGGCCATAAACATCGGAAGGGGAGCCATGGAGACGTTGTTTTCTTGACCAGTCGTGGGGAGGCGT TCCAACTTCGTCCACACGACAACCGACCAATGATCCTCGCAGCTGGAGACCATGACGCTGCAGTAATATCTCCAGGCGGCAGTATACAGACGACAATCGA GTTGCCAGCAGCTCCCACCCATGCCATTATCGCGGAAGATTTCTCAAACGACGGGCTGACAGATCTGATTCTGGTGACATCAAACGGGGTTTACGGGTTC GTCCAGACCAGGACTCCCGGTGCATTGTTCTTCAGCACATTGGTCGGTTGCCTTTTGATAGTGATGGGAGTAATCTTTGTTACGCAGCACCTCAACTCCA TGAAAGGAGGAAAGCCTCGAGCTTCTAGTGTGAGGTAA
AA sequence Show only first row Show all	>Lus10014275 pacid=23164714 polypeptide=Lus10014275 locus=Lus10014275.g ID=Lus10014275.BGIv1.0 annot-version=v1.0 MRKRDLAILMLSAFAIFFSLQHEGDFSFREAWFHLSDEYPIKYDGERLPPPVVADLNGDGRKEVLVATHDAKIQVLEPHSRRVDEGFSEARVLAEVSLLP DKIRVASGRRAVAMATGVVDKIYKQGLPLKQVLVVVTSGWSVMCFDHNLKKLWETSLQEDFPHNAHHREISVSISNYTLKHGDEGLIIVGGRMEVQPHIH WDPFEDIGAAERSAEQHRRSATEKEVSENSGTTNLRHFAFYAFAGRTGQLRWSRKNENIEEKASDVSQLIPQHNYKLDVHALNARQPGEKVAGKTTTYPF HKPEENNPPGKDSAKKISNLIGKAATYAGSAKSKKQLNYIPTITNYTQLWWVPNVVVAHQKEGIEALHLASGRTLCKLHLQEGGLHADINGDGVLDHVQA CICSFDLFMLFRFVSLALICLHWSIYLLPCLLAVGGNGAEKTVVTGSMEVLRPCWAVATSGVPVREQLFNVSICHHTLLNLFQHGEFSRNFGHAADVSSL EVAAPILIPRSDGHKHRKGSHGDVVFLTSRGEAFQLRPHDNRPMILAAGDHDAAVISPGGSIQTTIELPAAPTHAIIAEDFSNDGLTDLILVTSNGVYGF VQTRTPGALFFSTLVGCLLIVMGVIFVTQHLNSMKGGKPRASSVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51050			FG-GAP repeat-containing prote...		Lus10014275 [exp]	0	1
AT4G16440			ferredoxin hydrogenases (.1)		Lus10038798 [exp]	1.4	0.9179
AT5G22450			unknown protein		Lus10004878 [exp]	4.5	0.8802
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10011568 [exp]	4.6	0.8801
AT1G11060			WAPL (Wings apart-like protein...		Lus10018478 [exp]	6.9	0.8667
AT4G11110		SPA2	SPA1-related 2 (.1)		Lus10033942 [exp]	8.2	0.8443
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037517 [exp]	10.6	0.8664
AT3G14470			NB-ARC domain-containing disea...		Lus10039549 [exp]	11.4	0.8352
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10025070 [exp]	12.6	0.8423
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10008306 [exp]	12.8	0.8734
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10039491 [exp]	13.1	0.8173

Compare expression of checked genes

Lus10014275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.