Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36360 598 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 460 / 6e-152 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT1G45130 435 / 1e-143 BGAL5 beta-galactosidase 5 (.1) AT4G26140 407 / 5e-134 BGAL12 beta-galactosidase 12 (.1.2) AT3G52840 398 / 2e-129 BGAL2 beta-galactosidase 2 (.1) AT5G56870 394 / 7e-128 BGAL4 beta-galactosidase 4 (.1) AT2G28470 388 / 4e-124 BGAL8 beta-galactosidase 8 (.1.2) AT2G32810 359 / 6e-113 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT5G20710 343 / 3e-107 BGAL7 beta-galactosidase 7 (.1) AT1G31740 336 / 5e-105 BGAL15 beta-galactosidase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025980 [exp] 746 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10041798 [exp] 657 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10028348 [exp] 556 / 0 AT4G36360 1348 / 0.0 beta-galactosidase 3 (.1.2) Lus10024292 [exp] 460 / 3e-153 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1) Lus10037644 [exp] 450 / 5e-148 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10015625 [exp] 448 / 7e-147 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 440 / 5e-144 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000803 [exp] 426 / 1e-140 AT1G45130 1050 / 0.0 beta-galactosidase 5 (.1) Lus10006009 [exp] 400 / 4e-130 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G018100 [exp] 652 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.005G232600 [exp] 548 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 461 / 1e-153 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.003G038500 [exp] 453 / 4e-149 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 444 / 1e-145 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.006G144500 [exp] 437 / 2e-143 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.009G012400 [exp] 389 / 1e-124 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.011G044300 [exp] 366 / 9e-116 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.007G099800 [exp] 348 / 4e-109 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.017G057900 [exp] 349 / 6e-109 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02140 [flax] [poplar] Gal_Lectin Galactose binding lectin domain CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10014278 pacid=23164755 polypeptide=Lus10014278 locus=Lus10014278.g ID=Lus10014278.BGIv1.0 annot-version=v1.0 ATGGGAACTCAATCATTTTCCTCCAAGCTCGTATTGTTGCTGTGGTGCTTGTTTGGCTTAGTGGGTTCAATGCATGTTGAAGCCACAGTGACTTACGATA GGAAAGCAATTGTAATTAATGGGGAAAGGCGAATCCTTTTCTCTGGCTCCATTCATTACCCGAGAAGCATTCCTGATATGTGGGAAGATCTGATACAGAA GGCTAAAGATGGTGGGGTGGATGTAATAGAGACCTATGTGTTCTGGAATGTGCACGAACTCAGTCCTGGAAATTACAATTTTGAAGGCAGGAATGATTTG GTGAGGTTCATCAAGACTATCCATAAAGCAGGTCTCTTTGCTCATCTCCGCATTGGACCATACGTTTGTGCTGAATGGAACTTCGGAGGGTTTCCGGTTT GGTTGAAGTACATTCCTGGGATCAGCTTCAGAACTGATAATGAGCCTTTCAAGAGAGCAATGCAAGGATTCACTGAGAAGATTGTTGGGTTAATGAAGAG TGAAAGCTTGTTCGAATCCCAAGGTGGCCCCATCATTCTTTCCCAGATAGAAAATGAGTATGGTGCCCAAAGCAAGATGCTTGGTGCTGATGGGTACAAC TACATGAGCTGGGCTGCAAACATGGCTGTCAAGATGGGAACTGGAGTTCCATGGGTTATGTGCAAGGAAGATGATGCTCCCGATCCAGTTATAAACACAT GCAATGGATTTTACTGTGATACGTTTGCTCCCAACAAACCATACAAGCCTACATTATGGACTGAAGCTTGGAGTGGATGGTTCTCAGAGTTTGGGGGTCC TAATCATCAGCGCCCAGTTGAGGATTTGGCATTTGCTGTTGCTCGAGTTGATATTGATGCGTCCGAAGCTTTCCTGCACGGAGGAGAACTGCCTACTCTA ATTGTTCAATCAAGTGGCCATGCCGTGCATGTCTTTATCAATGGAGAGCTCTCAGGTTCTGCATTTGGAACAAGGGAGGACAGGAAGTTTACTTACAGAG GCAAGGTCAACCTACGTAGCAGGATGAACAAAATTGCATTGCTGAGCGTTGCTGTTGGACTTCCCAATGTGGGTGGACACTTTGAGACATGGTACACAGG AGTCTCGGGTCCTGTCGTTATTCATGGACTTGACCACGGGAAGTTAGACTTGTCTTGGCAAACCTGGTCTTACCAGGTTGGACTCAAAGGAGAAGCCTTG AATCTACTCTCTCCAACTGGTGTCTCTTCTGTTGAATGGATGCAATCGGCAGAAAAACAACAGCAACCTCTGAGATGGCATAAGTCTCATTTCAATGCCC CTGAAGGCGATGAGCCATTGGCTTTGGACTTGGAAGGTATGGGAAAGGGTCAGATATGGATCAATGGTCAGAGTATAGGGAGATACTGGACTGCATATGC TACCGGTCAATGCAATGGCTGCAGTTATACAGGATCATTCCGTCCTCCAAAGTGTCAACTAGGATGTGGTCAGCCAACTCAAAGATGGTATCATGTGCCG CGATCATGGCTGAAACCAACCCAGAACCTCTTGGTAGTTTTTGAGGAACTTGGAGGGGATCCTTCCAGTATTTCGCTCGTCAAAAGATCAGTGACTACCG TCTGTGCTGAGGTAGCGGAGTTCCACCCGACTCTTGAGAACTGGCAGATTGAAGAAAATGGAAGAACTGAAGAGTTCCACAGCCCGAAGGTTCATCTTCG GTGTAACAAAGGCCAGTCGATTTCCTCCATCAAGTTTGCAAGCTTCGGGACTCCTCTAGGAACTTGTGGCAGTTATCAGCAAGGAACTTGCCATGCTTCC ACCTCCAGCAACATCCTAGAGAAGAATTGCATAGGGAAACAGAGATGTGCTGTAACGATAGCAAACAGCAACTTTGGACAGGATCCCTGCCCAAATGTTT TGAAGAGGTTATCTGTTGAAGCAGTTTGTGCCCCAACAAATTTGAAAGTTTAG
AA sequence Show only first row Show all	>Lus10014278 pacid=23164755 polypeptide=Lus10014278 locus=Lus10014278.g ID=Lus10014278.BGIv1.0 annot-version=v1.0 MGTQSFSSKLVLLLWCLFGLVGSMHVEATVTYDRKAIVINGERRILFSGSIHYPRSIPDMWEDLIQKAKDGGVDVIETYVFWNVHELSPGNYNFEGRNDL VRFIKTIHKAGLFAHLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNEPFKRAMQGFTEKIVGLMKSESLFESQGGPIILSQIENEYGAQSKMLGADGYN YMSWAANMAVKMGTGVPWVMCKEDDAPDPVINTCNGFYCDTFAPNKPYKPTLWTEAWSGWFSEFGGPNHQRPVEDLAFAVARVDIDASEAFLHGGELPTL IVQSSGHAVHVFINGELSGSAFGTREDRKFTYRGKVNLRSRMNKIALLSVAVGLPNVGGHFETWYTGVSGPVVIHGLDHGKLDLSWQTWSYQVGLKGEAL NLLSPTGVSSVEWMQSAEKQQQPLRWHKSHFNAPEGDEPLALDLEGMGKGQIWINGQSIGRYWTAYATGQCNGCSYTGSFRPPKCQLGCGQPTQRWYHVP RSWLKPTQNLLVVFEELGGDPSSISLVKRSVTTVCAEVAEFHPTLENWQIEENGRTEEFHSPKVHLRCNKGQSISSIKFASFGTPLGTCGSYQQGTCHAS TSSNILEKNCIGKQRCAVTIANSNFGQDPCPNVLKRLSVEAVCAPTNLKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10014278 [exp]	0	1
AT5G19420			Regulator of chromosome conden...		Lus10039525 [exp]	1.4	0.9441
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10025980 [exp]	2.4	0.9417
AT1G23790			Plant protein of unknown funct...		Lus10013007 [exp]	2.8	0.9506
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10010969 [exp]	2.8	0.9354
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10013942 [exp]	5.0	0.9319
AT2G41460		ARP	apurinic endonuclease-redox pr...		Lus10000437 [exp]	5.4	0.9051
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10031354 [exp]	7.4	0.9230
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10025048 [exp]	8.0	0.9202
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10014976 [exp]	8.0	0.9283
AT1G78060			Glycosyl hydrolase family prot...		Lus10007775 [exp]	8.5	0.9160

Compare expression of checked genes

Lus10014278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.