Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44230 372 / 5e-119 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 211 / 5e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59200 206 / 6e-58 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 204 / 4e-56 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20540 200 / 7e-56 MEF21 mitochondrial editing factor 21 (.1) AT5G66520 200 / 2e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26630 195 / 6e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G31430 188 / 2e-51 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G06150 184 / 3e-48 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G40405 178 / 2e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025987 [exp] 296 / 7e-94 AT1G27660 119 / 6e-30 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029344 [exp] 211 / 2e-59 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029853 [exp] 191 / 5e-53 AT1G09190 575 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 189 / 4e-51 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027389 [exp] 185 / 9e-51 AT5G66520 393 / 7e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010183 [exp] 184 / 2e-50 AT5G08305 529 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017386 [exp] 180 / 2e-50 AT5G08305 357 / 9e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 186 / 2e-49 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 183 / 5e-49 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G119000 [exp] 436 / 5e-144 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G035900 [exp] 207 / 2e-58 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.002G220600 [exp] 204 / 9e-58 AT3G26630 481 / 2e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G239600 [exp] 205 / 5e-57 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 202 / 2e-55 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G175900 [exp] 197 / 3e-55 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G258766 [exp] 195 / 5e-54 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.016G065500 [exp] 196 / 7e-54 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 195 / 2e-53 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G086100 [exp] 191 / 1e-52 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10014279 pacid=23164671 polypeptide=Lus10014279 locus=Lus10014279.g ID=Lus10014279.BGIv1.0 annot-version=v1.0 ATGGTTTCCCTCTCCGCCAGGTCGATCTTCAAGCCACTGGAAAAATGCATCGTCAACCTTGGTTCTATGATCTTCAACCCAGAACAAACGGCTGTACTAC ATCGTGAATCACCAAAACAAACGGTGGTTTTCGCTCCCTTCTCTCATCTTCAACAGCAGCGAAACCGGCTGGAATTCGAACTTGTATCTGCGCTCGATTC CTGCACAAGTATCCTTCAAGTCAAGCAAGTGCATGCTCACATTCTCGGTAAAGGTATCAACCAATCCTCCTATGTCATCACCAAGCTCCTCCGGACGCTC AGCAAACTGGACGTTACGGTTGGATGTTATCCTCTCGCCATTTTCGCTCAGGTTCAGTACCCCAACCCCTTTCTTTATACTGCTATCATAAGGGCCTACT CGACTAGAGAGCGACTTTCCGAAGCTGTTGGGTTGTATAGGCTGATGCGAAGGGACAGAGTTATACCTGTTTCATTTACATTTACAGCACTTTTCAAGGG CTGTAGTGGAGCGAAAAATGCTTCGCTGGGTGAGCAGCTCCATGCGCAGACGATTCTGATTGGAGGGTTTGATTCTGATTTGCATGTTGGTAATTCAATC ATAGATGCGTACTTGAAATGTGGTCGGTTGGTTTGTGCGCGTAAGGTGTTCGATGAAATGCCGGAAAAGGATGTGATTTCGTATACGGGGTTAACTGTCG CTTATACGAAACGGGGAGATATGGACTCCGCCAGTGAGTTGTTTGATAGATCTCCTGCTAAGGATATGGTAGCTTGGACTGCTATGGTAACTGGATTTTC TCAGAATGCTAAGCCGAAGGAGGCAATAGAGACGTTTGAGAGGATGCAAAAAGCTGGCGTGGAAACTGACAAAGTCACTTTAATTGGTATTGTTTCAGCT TGTGCTCAATTGGGTGCAGCCAAGTATGCTGATTGGGTTCATGATATCGCTAGGAGTTCCGAGTTCGGTACCAATCATGTGATCCTAGGGTCAGCTCTGG TTGATATGTTCTCAAAGTGCGGTGATGTGGATTCAGCTCACGAAGTTTTTCAGGGGATACAGGAGAAAAATGTGTTCTCATACACTTCAATGATCTTGGG GAGTAGCAATAGTAGTAATTACCAGAACTATCATCAGCTGATTGATCAATCATCAAAGGATCATGACTATTCATGGCCAGCACAACCACCACCGGTACCA TCACCCTCTCTTAGATCCTTGATGAATCTAGAAAGCTTTGACGACTCGAATGATCAGTTGCTGCTCTCCAAGATTAAAGACGAGATGCCTGACGCCTTCC CGAAGCTGAGGGATATGCAGACCATCTACAACAGCAACAGAAACAACTATTTCTCTTCTACTACTTTTCCCCCATATTATGCAGCTGCAGCTGGTGGAAG CCCAAGGGATCAGGATTCAAGTTGTGACAGCAGAACATATCATGTTATGCCAAGTGTAAATGTGTTGACCTCGAATCTGTCTTCTTCTACTTTGGGGTCA AGCTCCCTTGATTTGAACTTAAGAGCTGTGGATCATCATTTCAACCATGCTACTCCCAGCCATAGCCATAGTACTACTACTTCAAGAAACTGCAGCATAC AATTGCAGCAGATGATGAGTCATCATCATCATTTCATGGGGGATAGTCCCTCCCACAGCTCCAATAATAATAATAAAACCGTTGGAATTGAAGCAGCAGT ATCACTGGGGATCAAAAAGATCAGCAAGAGGCCTATGATCAGTAGCTTTTCTGATCATCAGTCCTCGTCATCAAAGAACAATACTCAAGTAGATCATCAT AAAAAGAAACGGTCCACGTCATCAAGACCCTCTTGCCCACCATTGAAGGTGAGGAAGGAGAAACTTGGAGACAGAATTGCTTCACTTCAGAGGCTGGTTG CACCTTATGGAAAGACAGACACAGCCTCAGTATTGACGGAAGCTATTGGATACATACAATTCCTCCACGACCAAGTTCAGACATTGAGTGTGCCGTACAT GAGGTCAACATCGAACAACCAGCCAACTAGGCCATTCATGCTCAGGAGTTCAAGAGATGAGGAAGATCACCAGTATCATCAGCACCAGCATCGGCATGAA CATGAATCACAGAAGGAAGATCTGAAGAGTAGAGGGCTGTGCCTGGTGCCTCAATCTGTTGCTTCTTATTTAAACGGCTACGATCTTGGCATCTAA
AA sequence Show only first row Show all	>Lus10014279 pacid=23164671 polypeptide=Lus10014279 locus=Lus10014279.g ID=Lus10014279.BGIv1.0 annot-version=v1.0 MVSLSARSIFKPLEKCIVNLGSMIFNPEQTAVLHRESPKQTVVFAPFSHLQQQRNRLEFELVSALDSCTSILQVKQVHAHILGKGINQSSYVITKLLRTL SKLDVTVGCYPLAIFAQVQYPNPFLYTAIIRAYSTRERLSEAVGLYRLMRRDRVIPVSFTFTALFKGCSGAKNASLGEQLHAQTILIGGFDSDLHVGNSI IDAYLKCGRLVCARKVFDEMPEKDVISYTGLTVAYTKRGDMDSASELFDRSPAKDMVAWTAMVTGFSQNAKPKEAIETFERMQKAGVETDKVTLIGIVSA CAQLGAAKYADWVHDIARSSEFGTNHVILGSALVDMFSKCGDVDSAHEVFQGIQEKNVFSYTSMILGSSNSSNYQNYHQLIDQSSKDHDYSWPAQPPPVP SPSLRSLMNLESFDDSNDQLLLSKIKDEMPDAFPKLRDMQTIYNSNRNNYFSSTTFPPYYAAAAGGSPRDQDSSCDSRTYHVMPSVNVLTSNLSSSTLGS SSLDLNLRAVDHHFNHATPSHSHSTTTSRNCSIQLQQMMSHHHHFMGDSPSHSSNNNNKTVGIEAAVSLGIKKISKRPMISSFSDHQSSSSKNNTQVDHH KKKRSTSSRPSCPPLKVRKEKLGDRIASLQRLVAPYGKTDTASVLTEAIGYIQFLHDQVQTLSVPYMRSTSNNQPTRPFMLRSSRDEEDHQYHQHQHRHE HESQKEDLKSRGLCLVPQSVASYLNGYDLGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44230			Pentatricopeptide repeat (PPR)...		Lus10014279 [exp]	0	1
AT5G14520			pescadillo-related (.1)		Lus10000357 [exp]	11.5	0.8373
AT5G51540			Zincin-like metalloproteases f...		Lus10031136 [exp]	17.7	0.8013
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10013536 [exp]	30.8	0.7220
AT5G06410			DNAJ heat shock N-terminal dom...		Lus10016189 [exp]	33.9	0.6716
AT5G27395			Mitochondrial inner membrane t...		Lus10035347 [exp]	37.7	0.7740
AT3G18270		CYP77A5P	"cytochrome P450, family 77, s...		Lus10007062 [exp]	38.7	0.7648
AT1G13040			Pentatricopeptide repeat (PPR-...		Lus10036129 [exp]	45.1	0.7551
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10026516 [exp]	48.1	0.7723
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10013803 [exp]	55.0	0.7709
AT3G58580			DNAse I-like superfamily prote...		Lus10015981 [exp]	55.8	0.7513

Compare expression of checked genes

Lus10014279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.