Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50980 73 / 5e-17 XERO1 dehydrin xero 1 (.1) AT5G66400 56 / 6e-10 ATDI8, RAB18 RESPONSIVE TO ABA 18, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, Dehydrin family protein (.1.2) AT1G20440 49 / 3e-07 AtCOR47, RD17, COR47 cold-regulated 47 (.1) AT1G20450 47 / 8e-07 LTI45, ERD10, LTI29 LOW TEMPERATURE INDUCED 45, LOW TEMPERATURE INDUCED 29, EARLY RESPONSIVE TO DEHYDRATION 10, Dehydrin family protein (.1.2) AT2G21490 44 / 8e-06 LEA dehydrin LEA (.1) AT3G50970 40 / 0.0001 XERO2, LTI30 LOW TEMPERATURE-INDUCED 30, dehydrin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025983 [exp] 183 / 3e-60 AT3G50980 99 / 1e-27 dehydrin xero 1 (.1) Lus10041969 [exp] 55 / 2e-09 AT5G66400 66 / 2e-13 RESPONSIVE TO ABA 18, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, Dehydrin family protein (.1.2) Lus10017977 [exp] 46 / 3e-06 AT5G66400 66 / 2e-13 RESPONSIVE TO ABA 18, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, Dehydrin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G013200 [exp] 42 / 0.0001 AT1G20440 50 / 1e-06 cold-regulated 47 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00257 [flax] [poplar] Dehydrin Dehydrin
Representative CDS sequence Show only first row Show all	>Lus10014280 pacid=23164679 polypeptide=Lus10014280 locus=Lus10014280.g ID=Lus10014280.BGIv1.0 annot-version=v1.0 ATGGAAAGTTATCAGAATCAACCCACAGCTGCTCGCCGCAACACAGACCAAACTGCCGTCCAAACTGACGAGTACGGCAACCCCATTAGACACTCTGCTG CTGCAACTGGCTATGGAGCAGCGCCAGCTACTGGTTATGGAGCAGCCCCAGCTACTGGCTTTGCTGGCACTGGACATCACCATGGAGAAGGTGGCCATGG AATCACTGGGAAGCTCCATCGTTCCGGAAGCTCGTCTAGCTCCAGCTCATCTGAAGATGATGGGCTAGGCGGGAGAAGGAAGAAGGACAAGAGTATGAAG CAGAAGATTAAAGAGAAGCTGCCAGGTCAGCACAGGGATGACCATGCTACTTCCACAACTACACCTGGGGTCTACGGCTCAGCTGACGAGCCTCAGCACA AGAAAGGCATAATGGAGAAGATCAAGGACAAGCTCCCTGGCGGCCACCGTGATGACACTTATTGA
AA sequence Show only first row Show all	>Lus10014280 pacid=23164679 polypeptide=Lus10014280 locus=Lus10014280.g ID=Lus10014280.BGIv1.0 annot-version=v1.0 MESYQNQPTAARRNTDQTAVQTDEYGNPIRHSAAATGYGAAPATGYGAAPATGFAGTGHHHGEGGHGITGKLHRSGSSSSSSSSEDDGLGGRRKKDKSMK QKIKEKLPGQHRDDHATSTTTPGVYGSADEPQHKKGIMEKIKDKLPGGHRDDTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50980		XERO1	dehydrin xero 1 (.1)		Lus10014280 [exp]	0	1
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Lus10028390 [exp]	2.2	0.9402
AT5G38900			Thioredoxin superfamily protei...		Lus10005082 [exp]	8.5	0.9020
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Lus10041843 [exp]	10.5	0.9054
AT5G20950			Glycosyl hydrolase family prot...		Lus10013646 [exp]	12.0	0.9035
AT4G27450			Aluminium induced protein with...		Lus10018484 [exp]	14.1	0.8895
AT1G64280		SAI1, NIM1, NPR...	SALICYLIC ACID INSENSITIVE 1, ...		Lus10018756 [exp]	14.2	0.8539
AT4G24800		ECIP1	EIN2 C-terminus Interacting Pr...		Lus10042080 [exp]	15.2	0.8418
AT1G27290			unknown protein		Lus10003121 [exp]	19.3	0.8937
AT4G27450			Aluminium induced protein with...		Lus10011191 [exp]	19.7	0.8959
AT5G27830			unknown protein		Lus10029881 [exp]	21.2	0.8957

Compare expression of checked genes

Lus10014280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.