Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56940 211 / 7e-72 Ribosomal protein S16 family protein (.1) AT4G34620 145 / 6e-46 SSR16 small subunit ribosomal protein 16 (.1) ATCG00050 50 / 6e-09 ATCG00050.1, RPS16 ribosomal protein S16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025984 [exp] 259 / 6e-91 AT5G56940 208 / 1e-70 Ribosomal protein S16 family protein (.1) Lus10025592 [exp] 134 / 1e-41 AT4G34620 137 / 2e-43 small subunit ribosomal protein 16 (.1) Lus10027058 [exp] 132 / 5e-41 AT4G34620 136 / 4e-43 small subunit ribosomal protein 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G217400 [exp] 222 / 5e-76 AT5G56940 188 / 7e-63 Ribosomal protein S16 family protein (.1) Potri.013G128200 [exp] 138 / 2e-43 AT4G34620 139 / 6e-44 small subunit ribosomal protein 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00886 [flax] [poplar] Ribosomal_S16 Ribosomal protein S16
Representative CDS sequence Show only first row Show all	>Lus10014281 pacid=23164750 polypeptide=Lus10014281 locus=Lus10014281.g ID=Lus10014281.BGIv1.0 annot-version=v1.0 ATGGTCGTAAGGATCCGATTATCGAGGTTTGGCTGCAAGAACAAGCCGTTTTATCGTGTCATGGCTGCTGATAGCAGATCTCCTCGAGATGGAAAACACC TTGAAGTATTGGGCTACTACAATCCATTGCCTGGTCAAGATGGTGGCAAAAGAATGGGTCTAAATTTCGAGCGAGTAAAATATTGGTTGTCAGTCGGTGC TCAAGCCTCAGATCCTGTACAAAGGATTCTGTTCAGGGCAGGGGTTCTCCCTCCGCCACCTATGGTGGCTATGGGACGCAAGGGTGGACCACGTGATACC CGTCCTGTCGATCCGCTTACTGGACGAGTATTGAACCAGGAGAAGGCAGCCACAGGAACAGAGTCAACTACTTCTGATGATGCAGCCGTAGTGTCTACAT CATGA
AA sequence Show only first row Show all	>Lus10014281 pacid=23164750 polypeptide=Lus10014281 locus=Lus10014281.g ID=Lus10014281.BGIv1.0 annot-version=v1.0 MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQASDPVQRILFRAGVLPPPPMVAMGRKGGPRDT RPVDPLTGRVLNQEKAATGTESTTSDDAAVVSTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56940			Ribosomal protein S16 family p...		Lus10014281 [exp]	0	1
AT5G62440			Protein of unknown function (D...		Lus10035009 [exp]	2.2	0.7977
AT3G09890			Ankyrin repeat family protein ...		Lus10023911 [exp]	4.9	0.7557
AT2G09990			Ribosomal protein S5 domain 2-...		Lus10009252 [exp]	5.5	0.7873
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10029320 [exp]	6.8	0.7884
AT3G56570			SET domain-containing protein ...		Lus10026538 [exp]	8.4	0.7142
AT3G19508			unknown protein		Lus10013875 [exp]	14.3	0.7196
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10021016 [exp]	17.3	0.7186
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10023172 [exp]	18.3	0.7502
AT3G10950			Zinc-binding ribosomal protein...		Lus10011359 [exp]	21.0	0.7245
AT3G53740			Ribosomal protein L36e family ...		Lus10016501 [exp]	22.7	0.7511

Compare expression of checked genes

Lus10014281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.