Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18170 610 / 0 ATMPK7 MAP kinase 7 (.1) AT1G10210 581 / 0 ATMPK1 mitogen-activated protein kinase 1 (.1.2) AT4G36450 577 / 0 ATMPK14 mitogen-activated protein kinase 14 (.1) AT1G59580 566 / 0 ATMPK2 mitogen-activated protein kinase homolog 2 (.1.2) AT1G07880 412 / 4e-144 ATMPK13 Protein kinase superfamily protein (.1.2) AT4G01370 400 / 4e-139 ATMPK4 MAP kinase 4 (.1) AT4G11330 400 / 4e-139 ATMPK5 MAP kinase 5 (.1) AT1G01560 391 / 1e-135 ATMPK11 MAP kinase 11 (.1.2) AT2G43790 388 / 5e-134 ATMAPK6, MAPK6, ATMPK6 MAP kinase 6 (.1) AT3G45640 384 / 1e-132 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025986 [exp] 722 / 0 AT2G18170 617 / 0.0 MAP kinase 7 (.1) Lus10033197 [exp] 582 / 0 AT1G10210 660 / 0.0 mitogen-activated protein kinase 1 (.1.2) Lus10010637 [exp] 581 / 0 AT1G59580 657 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Lus10024668 [exp] 421 / 4e-147 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Lus10017518 [exp] 421 / 4e-147 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10028765 [exp] 420 / 8e-147 AT4G01370 630 / 0.0 MAP kinase 4 (.1) Lus10007921 [exp] 412 / 9e-144 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10036384 [exp] 405 / 7e-141 AT4G01370 681 / 0.0 MAP kinase 4 (.1) Lus10008339 [exp] 402 / 3e-139 AT2G43790 691 / 0.0 MAP kinase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G119500 [exp] 620 / 0 AT2G18170 662 / 0.0 MAP kinase 7 (.1) Potri.007G020100 [exp] 618 / 0 AT2G18170 654 / 0.0 MAP kinase 7 (.1) Potri.005G231100 [exp] 600 / 0 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.002G032100 [exp] 588 / 0 AT1G59580 624 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.003G131800 [exp] 420 / 1e-146 AT4G01370 656 / 0.0 MAP kinase 4 (.1) Potri.001G099900 [exp] 414 / 3e-144 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Potri.002G162500 [exp] 411 / 2e-143 AT4G01370 684 / 0.0 MAP kinase 4 (.1) Potri.007G139800 [exp] 406 / 5e-141 AT2G43790 684 / 0.0 MAP kinase 6 (.1) Potri.017G010200 [exp] 405 / 7e-141 AT2G43790 677 / 0.0 MAP kinase 6 (.1) Potri.014G088500 [exp] 400 / 3e-139 AT4G01370 676 / 0.0 MAP kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10014283 pacid=23164711 polypeptide=Lus10014283 locus=Lus10014283.g ID=Lus10014283.BGIv1.0 annot-version=v1.0 ATGGCTGCTACTCTGGTTGACCCACCCAACGGGGTGAGACAGAGAGGGAAGCATTACTACTCAATGTGGCAGAATGTCTTCGAGATTGACACCAAATACG TGCCGATTAAGCCCATAGGGAGAGGGGCTTACGGCATTGTTTGCTCTTCCATCAATAGGGAGACCAATGAGAAAGTTGCAATCAAGAAGATCAACAATGT CTTTGAAAACAAGACTGATGCTCTTAGGACTCTTAGAGAGTTGATACTGCTTAGGCATATGAGGCATCCGAATGTCATTGCTTTGAAGGATGTCATGTTG CCTACCACCAATCCTCTCACCTTCAAAGATGTGTATTTGGTCTACGAGCTTATGGATACTGATCTGCATCAGATCATCAAGTCCTCTCAATCTCTTTCCA ATGATCACATCAAATACTTCATTTTTCAGCTGCTACGAGGCCTGAACTACCTACACTCAGGCAACATTCTTCACCGCGATTTGAAGCCAGGAAACCTTCT CGTGAATGCAAACTGCGAGCTTAAGATTTGCGACTTCGGATTAGCGAGAACAACAAGCCAAGGCAACGAGGGGTTCATGACCGAGTACGTCGTCACCAGA TGGTACCGTGCACCCGAGCTCCTCCTATCCTGTGACAACTACGGAACTTCCATTGACATCTGGTCCGTCGGATGCATCTTTGCCGAAATCCTGGGACGGA AACCCATCTTCCCGGGAACGGAGTGCCTCAATCAGCTCAAACTGATCATCAACGTGCTAGGAAGCCAGGAGGATGCCGAGCTTGAATTCATCGACAGCTC CAAATCCAGAAGGTACATTAAGACGCTAGCTCACTCGAGAGGAGTCAGTTTCTCGCAATTGTACCCTCGAGCAGACCCTCTGGCGATAGACTTGCTTCAG AGGATGCTTGTGTTTGATCCCACGAAACGGATCACTGTCACCGAGGCGCTTATGCATCCTTACGTGTCGGAGCTCTATGATGAGCGGAGAAGCATGCCTA CTGCCCCAGTTCCTGTCAAGCTTGATATAGATGAGAGTCTTGGGGAGAAAATGATTAGAGAGATGATGTGGGATGAGATGTTGCTTTACCATCCCTCAAT CTAG
AA sequence Show only first row Show all	>Lus10014283 pacid=23164711 polypeptide=Lus10014283 locus=Lus10014283.g ID=Lus10014283.BGIv1.0 annot-version=v1.0 MAATLVDPPNGVRQRGKHYYSMWQNVFEIDTKYVPIKPIGRGAYGIVCSSINRETNEKVAIKKINNVFENKTDALRTLRELILLRHMRHPNVIALKDVML PTTNPLTFKDVYLVYELMDTDLHQIIKSSQSLSNDHIKYFIFQLLRGLNYLHSGNILHRDLKPGNLLVNANCELKICDFGLARTTSQGNEGFMTEYVVTR WYRAPELLLSCDNYGTSIDIWSVGCIFAEILGRKPIFPGTECLNQLKLIINVLGSQEDAELEFIDSSKSRRYIKTLAHSRGVSFSQLYPRADPLAIDLLQ RMLVFDPTKRITVTEALMHPYVSELYDERRSMPTAPVPVKLDIDESLGEKMIREMMWDEMLLYHPSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Lus10014283 [exp]	0	1
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10024074 [exp]	2.4	0.9403
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10009798 [exp]	3.2	0.9224
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10019409 [exp]	3.5	0.8871
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029334 [exp]	4.6	0.8455
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10030261 [exp]	4.9	0.9078
AT3G11760			unknown protein		Lus10013598 [exp]	5.2	0.8724
AT2G25430			epsin N-terminal homology (ENT...		Lus10019402 [exp]	6.5	0.8595
AT1G18210			Calcium-binding EF-hand family...		Lus10018012 [exp]	6.6	0.9042
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10036623 [exp]	7.7	0.8917
AT2G33500	CO	COL14	B-box type zinc finger protein...		Lus10041526 [exp]	8.5	0.8217

Compare expression of checked genes

Lus10014283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.