Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19630 249 / 2e-78 CYP722A1 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) AT1G05160 134 / 8e-35 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT2G32440 130 / 9e-34 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT4G19230 128 / 5e-33 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G45340 125 / 4e-32 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT3G19270 119 / 2e-29 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT5G05690 116 / 4e-29 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT2G29090 116 / 1e-28 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT3G30180 112 / 4e-27 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT4G36380 107 / 3e-25 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025990 [exp] 564 / 0 AT1G19630 168 / 5e-48 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) Lus10024272 [exp] 240 / 6e-75 AT1G19630 592 / 0.0 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) Lus10018898 [exp] 190 / 9e-56 AT5G45340 301 / 3e-97 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10028594 [exp] 190 / 1e-55 AT5G45340 299 / 1e-96 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10021725 [exp] 130 / 1e-33 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10042652 [exp] 130 / 2e-33 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10034768 [exp] 123 / 4e-31 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10033308 [exp] 120 / 6e-30 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10043357 [exp] 120 / 8e-30 AT2G32440 643 / 0.0 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G033000 [exp] 267 / 4e-85 AT1G19630 607 / 0.0 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) Potri.002G069600 [exp] 183 / 3e-53 AT5G45340 296 / 1e-95 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Potri.014G029100 [exp] 139 / 6e-37 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.014G179100 [exp] 131 / 4e-34 AT1G05160 741 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.002G126100 [exp] 127 / 2e-32 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.008G067500 [exp] 124 / 1e-31 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.013G161800 [exp] 124 / 2e-31 AT1G05160 694 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.010G189800 [exp] 122 / 5e-31 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.001G003000 [exp] 121 / 2e-30 AT5G36110 389 / 3e-131 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.001G003100 [exp] 120 / 3e-30 AT5G36110 424 / 2e-145 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10014285 pacid=23164694 polypeptide=Lus10014285 locus=Lus10014285.g ID=Lus10014285.BGIv1.0 annot-version=v1.0 ATGGCGGAGCTAGCGAGGAACAATGAACTACTGATGATCATGTCGTTTTTGAGGAACAACACTGACCTTATAATTGCAGGCTTCCTGTTAATAGCTGCAA CTTTTCTCCTGTCCAGATTCTGGAGCATACTAGCTGCTGCAGGGGGGGAAGTCCACAACATCCCTGGCCGCTATGGTCTCCCGTTTATCGGCGAAACCTT CGCTTTCCTGTCGGCCACCAACAGCTTCAAGGGGTGTTACGAGTTTGTCAGTTTGAGAAGATCATGGTACGGGAAGTGGTTCAAGACGAGGCTGTTCGGG AAAATCCACGTGTTTGTTCCGACATCTGAGGGAGCTAGGAAGATATTCACCAACGATTTCACCTACTTCAACAAAGGCTATGTGAAATCAATGGCTGATT GTGTCGGGAGCAAGAGCTTGCTCTCTGTCCCTCACGACAGCCATAAGAGGATTAGGCGTTTGCTCCAGGAACCTTTCTCTATGCCTTCCCTTTCCACTTT CGTCAGCAAGTTTGACAGAATGCTCTCCCGCAAGCTCGAAACAGTCCAGCGGATCGGGGAGAGCTTCACTGTTCTTGACTTCAGCATGAAGATGACATTC GATGCTATGTGTAACATGCTGATGAGCATTGAAGAGGATTCCTTACTGCGGGAGATCGAGAAGGATTGCATTGCTGTTTCGGAAGCTATGCTGTCGTTTC CTGTGATGATTCCAGGGACCAGATACTATAAAGGAATCAAGGCAAGGGAAAGGCTGATGGAAAGATTTGGGGGTATGATTGCCAGGAGAAGAAGTGGATT GGAGTGTCATGAAGATTTCTTGCAGTCCATGCTGGCAAAGGATTCGTGTCCGCCAAGCGAAAAGCTGGAGGATTCGGAGATCATGGATAATCTCCTGACG CTTATAATTGCAGGCCAGACCACAACTGCTGCTGCCATGATGTGGAGTGTCAAATTTCTACACGACAATCAAGAAGCTCAGGATCGGCTCAGGGAAGAAC AATTGGCTATTGCCAGGGACAAAGAAGAGGACTATGTGCTTAGTCTAGCAGATGTCAACAGCATGTCCTACGGTCTGAAGGTAAGTTCTGAATCAAATCC CGAGGAAAGAAAGGAACTTTAA
AA sequence Show only first row Show all	>Lus10014285 pacid=23164694 polypeptide=Lus10014285 locus=Lus10014285.g ID=Lus10014285.BGIv1.0 annot-version=v1.0 MAELARNNELLMIMSFLRNNTDLIIAGFLLIAATFLLSRFWSILAAAGGEVHNIPGRYGLPFIGETFAFLSATNSFKGCYEFVSLRRSWYGKWFKTRLFG KIHVFVPTSEGARKIFTNDFTYFNKGYVKSMADCVGSKSLLSVPHDSHKRIRRLLQEPFSMPSLSTFVSKFDRMLSRKLETVQRIGESFTVLDFSMKMTF DAMCNMLMSIEEDSLLREIEKDCIAVSEAMLSFPVMIPGTRYYKGIKARERLMERFGGMIARRRSGLECHEDFLQSMLAKDSCPPSEKLEDSEIMDNLLT LIIAGQTTTAAAMMWSVKFLHDNQEAQDRLREEQLAIARDKEEDYVLSLADVNSMSYGLKVSSESNPEERKEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10014285 [exp]	0	1
AT5G16970		AT-AER	alkenal reductase (.1)		Lus10035274 [exp]	1.0	0.9471
AT4G24130			Protein of unknown function, D...		Lus10001674 [exp]	4.6	0.9236
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10030872 [exp]	4.9	0.9216
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10019926 [exp]	6.0	0.9302
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10023268 [exp]	7.2	0.9378
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10025990 [exp]	7.9	0.9344
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10026496 [exp]	9.2	0.8964
					Lus10028109 [exp]	10.4	0.8712
AT1G05675			UDP-Glycosyltransferase superf...		Lus10024118 [exp]	12.3	0.8807
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10001394 [exp]	13.8	0.9140

Compare expression of checked genes

Lus10014285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.