Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66420 986 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025992 [exp] 1352 / 0 AT5G66420 1006 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021000 [exp] 1070 / 0 AT5G66420 966 / 0.0 unknown protein Potri.005G120100 [exp] 513 / 6e-177 AT5G66420 555 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06792 [flax] [poplar] UPF0261 Uncharacterised protein family (UPF0261) CL0151 [flax] [poplar] PK_TIM PF09370 [flax] [poplar] PEP_hydrolase Phosphoenolpyruvate hydrolase-like
Representative CDS sequence Show only first row Show all	>Lus10014286 pacid=23164757 polypeptide=Lus10014286 locus=Lus10014286.g ID=Lus10014286.BGIv1.0 annot-version=v1.0 ATGGCAGATACTGATCCCAATCCCCGAGTTTTCTGCGTCGGAACCGCCGACACTAAGCTCGAAGAGCTTCGATTTCTGTCAGATTCCGTAGTTTCCTTCT TCAACAACTCTTCTTCCTCTTATACGGTAGAGGTTGTGATGGTGGATGTTTCCGTTGGTCGGAAGGCGGCAGAAATCCCTACAGGAGATTTCAAATTCGT GACGAGAAATGAGGTGCTTGCTTCATCCAAGCAGCAACAGCTTCCGGACGACAGAGCCGAAGCTGTTGCGGTGATGAGTAGGGCGCTGAAATGCTTCCTG GAAAAGGCGCAAGAGAGTTGTATCCTAGCCGGAGCTATCGGAATCGGAGGTAGTGGAGGCACTTCTCTTATATCCTCTGCGTTCAGATCGCTTCTGATTG GATTGCCGAAGATGATTGTGTCCACTGTGGCAAGTGGCCAAACTGGACCTTACGTTGGAACTTCTGATCTTGTATTGTTTCCTTCCGTTGTGGATGTGTG CGGCATTAACAGTGTAAGTAGAGTCATCTTGTCGAATGCCGGGGCTGCTTTTGCCGGAATGGTTACTGGAAGGCTGAATAAGGCTGGGAGCTCTTCTGGT GGGGAGAGTATGAAACCTACTGTTGGGATGACCATGTTTGGGGTCACAACTCCGTGTGTGAATGCTGTTAAGGAGAGGCTGGAAAAGGAAGGTTATGAGA CGTTGGTTTTCCATGCCACTGGTGTTGGAGGAATGGCAATGGAGTCTCTCGTGAGGGAGGGGTTTATACAGGGGGTCTTGGACATTACTACTACCGAGGT CGCAGATTATATAGTTGGGGGTGTTATGGCTTGTGATAGTTCCCGTTTTGATGCCATCGTACAGAAGAAAATTCCTTTGGTCTTGAGTGTTGGAGCCTTG GATATGGTTAATTTTGGAGCCAAGGATACTATACCTTCTCAATTCCAGCAACGGAATATTCATGTTCACAACGAACAGGTTTCATTAATACGAACAACAG CAGATGAAAATAAGAAATTTGCAGCCTTCATAGCTGATAAACTCAATAATTCGTCGGCGAAGATCTGTGTTTGCCTGCCAGAAAAGGGTGTCTCTGCTTT GGATGCCCAAGGGAAGCCATTTTATGATCCGGATGCAACTTCTACTTTACTGAACGAACTCAAACGTCTGATTCAGAAGACGGAAGATAGGCAGGTGAAA GTGTTCCCTTACAATATCAATGACCCTGAGTTTGCCAATGCTCTTGTCGACTCGTTTCTGGAGATAACTTTGGCACATCCTATGAAACCAAATCCTCCAG AAGCTCCTAAATGTGGATCCTCTCAAGATCAAAGTAAAAGGAATGTAGAATCCTTAAGATCTGCAACCATTCCATACAGCCCAAGTAACTATCCTGATGC TAGACCAGATACCTTGCAAAAGACCAGCGCAATATTGCAGCAGCTGAGAGGTCAAATAGATCAAGGATTCCCAATTATTGGGGCTGGTGCAGGAACAGGG ATATCAGCAAAGTTTGAGGAAGCTGGTGGTGTTGATCTTATAGTCTTGTATAACTCAGGACGCTTTCGCATGGCTGGCAGGGGTTCTTTGGCGGGCTTGT TGCCATTTGCTGATGCAAATGCCATCGTAATGGAAATGGCAAATGAAGTTTTACCAGTAACTGAGAGAGTTCCCGTGCTTGCTGGAGTATGTGGAACCGA TCCTTTCCGCCGTATGGATTACTTCCTGAAGCAGCTGGAATCAATTGGATTCTGCGGGGTGCAGAACTTTCCAACTGTTGGACTGTTTGATGGCAACTTC AGACAAAATCTAGAAGAGACGGGAATGGGATATGGCTTGGAGGTTAAAATGATTGCGAAGGCTCATAAACTAGGTCTCTTGACAACACCATATGCTTTTA ACCCAAAGGAAGCTACCGAAATGGCAAAGGCCGGTGCTGATATCATTGTTGCACACATGGGGCTAACCACATCTGGATCAATCGGTGCGAAAACTGCAAT CTCACTCGAGGAAAGTGTCAATTGTGTCCAAGCAATTGCAGACGCCGCGCACAAGATCAACCCTGCCGTCATTGTACTGTGCCATGGAGGTCCGATATCT TCACCCAAAGAAGCAGAGTTCGTACTGAAGAGAACTAATGGAGTGCATGGATTCTACGGTGCATCAAGCATGGAGAGACTCCCTGTTGAACAAGCTATAA CGAGCACAATGCGACAGTACAAATCGATTTCCATAAAAAAGTAA
AA sequence Show only first row Show all	>Lus10014286 pacid=23164757 polypeptide=Lus10014286 locus=Lus10014286.g ID=Lus10014286.BGIv1.0 annot-version=v1.0 MADTDPNPRVFCVGTADTKLEELRFLSDSVVSFFNNSSSSYTVEVVMVDVSVGRKAAEIPTGDFKFVTRNEVLASSKQQQLPDDRAEAVAVMSRALKCFL EKAQESCILAGAIGIGGSGGTSLISSAFRSLLIGLPKMIVSTVASGQTGPYVGTSDLVLFPSVVDVCGINSVSRVILSNAGAAFAGMVTGRLNKAGSSSG GESMKPTVGMTMFGVTTPCVNAVKERLEKEGYETLVFHATGVGGMAMESLVREGFIQGVLDITTTEVADYIVGGVMACDSSRFDAIVQKKIPLVLSVGAL DMVNFGAKDTIPSQFQQRNIHVHNEQVSLIRTTADENKKFAAFIADKLNNSSAKICVCLPEKGVSALDAQGKPFYDPDATSTLLNELKRLIQKTEDRQVK VFPYNINDPEFANALVDSFLEITLAHPMKPNPPEAPKCGSSQDQSKRNVESLRSATIPYSPSNYPDARPDTLQKTSAILQQLRGQIDQGFPIIGAGAGTG ISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAIVMEMANEVLPVTERVPVLAGVCGTDPFRRMDYFLKQLESIGFCGVQNFPTVGLFDGNF RQNLEETGMGYGLEVKMIAKAHKLGLLTTPYAFNPKEATEMAKAGADIIVAHMGLTTSGSIGAKTAISLEESVNCVQAIADAAHKINPAVIVLCHGGPIS SPKEAEFVLKRTNGVHGFYGASSMERLPVEQAITSTMRQYKSISIKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66420			unknown protein		Lus10014286 [exp]	0	1
AT5G05570			transducin family protein / WD...		Lus10030399 [exp]	1.0	0.7168
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10012415 [exp]	4.2	0.6426
AT1G27040			Major facilitator superfamily ...		Lus10032876 [exp]	18.9	0.6664
AT5G27380		GSHB, GSH2	glutathione synthetase 2 (.1)		Lus10029976 [exp]	59.9	0.5904
AT1G73660			protein tyrosine kinase family...		Lus10009062 [exp]	61.8	0.5958
AT2G34930			disease resistance family prot...		Lus10002743 [exp]	63.7	0.5871
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10012703 [exp]	171.2	0.5037
AT4G32250			Protein kinase superfamily pro...		Lus10009358 [exp]	179.0	0.5051
					Lus10018519 [exp]	185.5	0.5073
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10025464 [exp]	187.3	0.5236

Compare expression of checked genes

Lus10014286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.