Plant FIBer expression Database

Lus10014287 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66440 49 / 4e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025994
[exp]
202 / 2e-66 AT5G66440 91 / 5e-22 unknown protein
Lus10028329
[exp]
69 / 3e-14 AT5G66440 117 / 1e-31 unknown protein
Lus10041775
[exp]
66 / 5e-13 AT5G66440 123 / 1e-33 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G120300
[exp]
56 / 1e-09 AT5G66440 134 / 4e-38 unknown protein
Potri.007G021500
[exp]
52 / 2e-08 AT5G66440 147 / 6e-43 unknown protein
Potri.004G157300
[exp]
39 / 0.001 AT4G34560 107 / 9e-29 unknown protein
PFAM info
Representative CDS sequence
>Lus10014287 pacid=23164771 polypeptide=Lus10014287 locus=Lus10014287.g ID=Lus10014287.BGIv1.0 annot-version=v1.0
ATGTCTGCGGCGCTGGCTCTCTGGCTCTGGATTCTCATCCGCCTTCCGATCTCAATCCAGATCGCAGCGGACTTCTTTCGCCGCCTCAGCGTTGTAATAC
AGAGTCCTCTGTTCGTTTTCCTGTTCTTCAACGGCATCATCTTCGCCCTCGTTATTATCAAGTCCAGCAGATTCGCCACCCCGAGCAGCTGCGACTGTGG
GAATTCACTATTGGAGAGTACGATGGTTTCCTTGGAGGAGGAAGACGGGGTTGTTGTGTTTCAAGAACAGCAGATTATTACATCGTCCCAACAAGTGAAT
TCCATTCCCGACAGCAGTAGCCAAGTAGAAGAAGAAGATGATGGCTCCAGAAACGACGCCGTGTTTTACGCTTCAGAGTCTGGCTCGGAAGAAGGAGATG
ATGATGATGATGATGAGCTGAGTAACGAAGAATTCCAACGGACGGTGGAAGAGTTTATTGCCAAGAATTTGAGGTTTTTTCGACGGGAGGAGACTGTTAC
ATTTAACGACAATTGA
AA sequence
>Lus10014287 pacid=23164771 polypeptide=Lus10014287 locus=Lus10014287.g ID=Lus10014287.BGIv1.0 annot-version=v1.0
MSAALALWLWILIRLPISIQIAADFFRRLSVVIQSPLFVFLFFNGIIFALVIIKSSRFATPSSCDCGNSLLESTMVSLEEEDGVVVFQEQQIITSSQQVN
SIPDSSSQVEEEDDGSRNDAVFYASESGSEEGDDDDDDELSNEEFQRTVEEFIAKNLRFFRREETVTFNDN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G66440 unknown protein Lus10014287
[exp]
0 1
AT1G29395 COR413IM1, COR4... cold regulated 414 thylakoid m... Lus10004547
[exp]
2.8 0.8068
Lus10042299
[exp]
5.9 0.8035
AT3G53730 Histone superfamily protein (.... Lus10004949
[exp]
7.5 0.8321
AT5G53390 O-acyltransferase (WSD1-like) ... Lus10002836
[exp]
8.7 0.8113
AT3G14300 ATPMEPCRC, ATPM... A. THALIANA PECTIN METHYLESTER... Lus10025021
[exp]
11.3 0.6891
AT3G04380 SDG31, SUVR4 SET DOMAIN PROTEIN 31, SET-dom... Lus10022657
[exp]
20.5 0.7221
AT2G25180 GARP ARR12 response regulator 12 (.1) Lus10036303
[exp]
24.2 0.7410
AT5G03610 GDSL-like Lipase/Acylhydrolase... Lus10043442
[exp]
24.8 0.7811
AT3G53730 Histone superfamily protein (.... Lus10005896
[exp]
31.7 0.7916
AT5G35520 MIS12, ATMIS12 MIS12 HOMOLOGUE, ARABIDOPSIS M... Lus10009652
[exp]
37.6 0.7876

Lus10014287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.