Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66460 583 / 0 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) AT3G10890 453 / 2e-158 Glycosyl hydrolase superfamily protein (.1) AT3G10900 411 / 6e-142 Glycosyl hydrolase superfamily protein (.1) AT5G01930 407 / 1e-139 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) AT1G02310 385 / 8e-132 MAN1 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) AT2G20680 376 / 8e-128 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) AT4G28320 369 / 9e-125 MAN5, AtMAN5 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) AT3G30540 300 / 1e-99 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025995 [exp] 809 / 0 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10030347 [exp] 425 / 2e-146 AT5G66460 422 / 2e-145 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10007900 [exp] 417 / 4e-143 AT5G66460 417 / 4e-143 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10014184 [exp] 404 / 2e-138 AT5G01930 674 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Lus10033687 [exp] 387 / 6e-132 AT2G20680 644 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10031650 [exp] 385 / 3e-131 AT2G20680 655 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10039833 [exp] 382 / 3e-130 AT2G20680 633 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10007210 [exp] 377 / 3e-128 AT5G66460 401 / 5e-138 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10007211 [exp] 389 / 2e-127 AT1G02310 405 / 4e-134 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G120500 [exp] 644 / 0 AT5G66460 588 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.007G022000 [exp] 633 / 0 AT5G66460 573 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G229600 [exp] 535 / 0 AT5G66460 542 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.002G184500 [exp] 438 / 3e-152 AT5G66460 447 / 5e-156 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.006G109900 [exp] 415 / 1e-141 AT5G01930 659 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.016G138600 [exp] 412 / 2e-141 AT5G01930 683 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.013G130400 [exp] 394 / 2e-134 AT2G20680 661 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.006G009400 [exp] 369 / 2e-124 AT4G28320 430 / 2e-148 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) Potri.019G070200 [exp] 296 / 2e-97 AT3G10890 302 / 3e-100 Glycosyl hydrolase superfamily protein (.1) Potri.016G014801 [exp] 207 / 7e-65 AT2G20680 231 / 2e-74 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00150 [flax] [poplar] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Lus10014288 pacid=23164682 polypeptide=Lus10014288 locus=Lus10014288.g ID=Lus10014288.BGIv1.0 annot-version=v1.0 ATGATGGGTTCGGCTCTATGTTGGATTCTGTCCATTCTCCTCCTGCTCAACCACCACCAGGGTTTCATCAACGCCGCAGGAGACGATTTCATAAAGACCA GAGGAACCCATTTCCTGCTGAACGGGAACCTCTTCTACGCAAACGGGTTCAATGCCTACTGGCTAATGTACGTCGCCTCTGACCCTTCTCAGAGATCGAA AGTGTCGGCTGCCTTCCAGGAAGCCAGGTCCCATGACCTAACTGTTGCACGCACTTGGGCCTTCAGCGATGGTGGTTACAGGCCGCTTCAGTATGCCCCT GGCTCCTACAACGAAGACATGTTTAAGGGGCTGGATTTTGTGGTGTCTGAGGCAAGAAGGCATGGGGCGAAGCTGATAATGAGCTTAGTGAACAACTATG ACAGCTTTGGTGGGAAGAAACAATATGTGAACTGGGCTAGAGCTCATACTAGCCGCTACCTTGCTTCTGATGACGATTTCTTCACTGATCCTGTTGTTAA AGGCTATTACAAGAATCATATACAGACTGTACTTAACAGACAAAACACATTCACTGGAATTCGTTACAAAGACGATCCTACTATCATGGCTTGGGAGCTA ATGAACGAGCCCAGATGCACTTCTGATTCTTCCGGCAGGACTATCCAGGCGTGGATTACGGAGATGGCGTCCTTTGTGAAGTCAATAGACAGGAATCATT TGCTTGAAGCTGGTTTAGAAGGTTTCTATGGCCCATCTACTCCTCAAAAGATGACCATTAACCCTTCAGTTCAAGTTGGTACAGATTTCATCGCCAACAA CAAAATTCCTGGCATCGACTTTGCTACCGTCCATTCATATCCGGATCAATGGCTACCAAACTCAAACGACCAATCCCAGCTGTCTTTCATGAACAACTGG CTGAATGCCCACATCCAGGACGCACAGTATATCCTTGGAAAGCCAATCCTCATAGCCGAATTCGGAAAGTCGTGGAAGGACTCAGGGTTCACTACCTACC AGAGGGACCAGATGTTCAATGCCGTGTACTACAAGATATACGCCTCGGCTAAACGCGGAGGAGCTGCAGGAGGGGCACTGTTCTGGCAGCTCCTGACAGA GGGCATGGACAGCTTCCGAGATGGGTACGAGGTGGTTTTAGGGGAGACTTCCTCGACGACGAATTTGATAAGGCAGCAGTCTCACAAGCTGTATCAGATC AGGAAGATATTTGCTAGGATTGGGAATGCCAAGAGGTGGAAGAGGGCCAGGATGAGCGGGCGTAGGACTGGTGGGAGAAAGGGTATTGGTAACTGA
AA sequence Show only first row Show all	>Lus10014288 pacid=23164682 polypeptide=Lus10014288 locus=Lus10014288.g ID=Lus10014288.BGIv1.0 annot-version=v1.0 MMGSALCWILSILLLLNHHQGFINAAGDDFIKTRGTHFLLNGNLFYANGFNAYWLMYVASDPSQRSKVSAAFQEARSHDLTVARTWAFSDGGYRPLQYAP GSYNEDMFKGLDFVVSEARRHGAKLIMSLVNNYDSFGGKKQYVNWARAHTSRYLASDDDFFTDPVVKGYYKNHIQTVLNRQNTFTGIRYKDDPTIMAWEL MNEPRCTSDSSGRTIQAWITEMASFVKSIDRNHLLEAGLEGFYGPSTPQKMTINPSVQVGTDFIANNKIPGIDFATVHSYPDQWLPNSNDQSQLSFMNNW LNAHIQDAQYILGKPILIAEFGKSWKDSGFTTYQRDQMFNAVYYKIYASAKRGGAAGGALFWQLLTEGMDSFRDGYEVVLGETSSTTNLIRQQSHKLYQI RKIFARIGNAKRWKRARMSGRRTGGRKGIGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10014288 [exp]	0	1
AT2G14520			CBS domain-containing protein ...		Lus10030665 [exp]	5.4	0.8197
AT2G16595			Translocon-associated protein ...		Lus10026282 [exp]	8.1	0.8017
AT5G02190		EMB24, ATASP38,...	PROMOTION OF CELL SURVIVAL 1, ...		Lus10024375 [exp]	9.2	0.7856
AT4G28760			Protein of unknown function (D...		Lus10011911 [exp]	10.0	0.7670
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10034184 [exp]	12.6	0.7692
AT1G45000			AAA-type ATPase family protein...		Lus10028807 [exp]	14.0	0.7464
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10035483 [exp]	18.9	0.7619
AT5G44670			Domain of unknown function (DU...		Lus10024731 [exp]	19.6	0.7443
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10008055 [exp]	19.7	0.7452
AT5G02190		EMB24, ATASP38,...	PROMOTION OF CELL SURVIVAL 1, ...		Lus10010854 [exp]	19.9	0.7517

Compare expression of checked genes

Lus10014288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.