Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66470 563 / 0 RNA binding;GTP binding (.1) AT1G30960 108 / 1e-25 GTP-binding family protein (.1) AT3G12080 65 / 5e-11 EMB2738 embryo defective 2738, GTP-binding family protein (.1.2) AT1G78010 57 / 1e-08 tRNA modification GTPase, putative (.1) AT2G27200 44 / 0.0002 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08410 43 / 0.0003 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025995 [exp] 419 / 8e-141 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10023046 [exp] 95 / 4e-21 AT1G30960 499 / 5e-176 GTP-binding family protein (.1) Lus10032427 [exp] 93 / 2e-20 AT1G30960 489 / 1e-171 GTP-binding family protein (.1) Lus10027371 [exp] 61 / 7e-10 AT3G12080 874 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10002557 [exp] 60 / 3e-09 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10029578 [exp] 57 / 2e-08 AT1G78010 677 / 0.0 tRNA modification GTPase, putative (.1) Lus10006309 [exp] 55 / 7e-08 AT1G78010 669 / 0.0 tRNA modification GTPase, putative (.1) Lus10004103 [exp] 45 / 0.0001 AT1G08410 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013359 [exp] 45 / 0.0001 AT1G08410 745 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021900 [exp] 561 / 0 AT5G66470 535 / 0.0 RNA binding;GTP binding (.1) Potri.001G160800 [exp] 103 / 5e-24 AT1G30960 491 / 4e-173 GTP-binding family protein (.1) Potri.009G054200 [exp] 50 / 3e-06 AT3G12080 813 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Potri.002G092600 [exp] 49 / 6e-06 AT1G78010 688 / 0.0 tRNA modification GTPase, putative (.1) Potri.009G017000 [exp] 43 / 0.0004 AT1G08410 755 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase CL0007 [flax] [poplar] KH PF07650 [flax] [poplar] KH_2 KH domain
Representative CDS sequence Show only first row Show all	>Lus10014289 pacid=23164674 polypeptide=Lus10014289 locus=Lus10014289.g ID=Lus10014289.BGIv1.0 annot-version=v1.0 ATGGAGCTTGCTTCCAGTTTCTCCGCTGCTTTCCCTGCGGACAAGTTCACGCTTAACTCCATTCCGAGTTTCACCATCTCCCGCCATTTCTGCGCGAGGA ACTTTTCCAGAGCGACTCAAATTCGAATTAAAGCCACCGCCGGCGATTTCACTTCTCGGAAGAGGAATCCTCTGCGCCGGCGTCTCTACTCGCTCAACAA TCAGCTTTTAATCGACGAACAAAAACTCGACGAAGACGACGGTGATGAAGAAGGCCAAGAAGAAGATGAATACGACGCTGCCATTTTGTCGCTTAGCATG AAGCCAGACAGGACCATGGCCTTACTGGACGACTACGAGATGGAAGAGCTTGACTACTCCACTGACCCTAACCATCGCAGCGGATTTGTTGCTGTACTTG GGAAGCCCAATGTTGGAAAGAGTACATTGTCCAACCAGATGATTGGGCAGAAGTTGTCTATAGTTACGGATAAGCCTCAAACTACTAGGCATCGAATTCT TGGTATATGCTCTGCTCCAGAATATCAGATCGTGCTCTATGATACGCCCGGTGTGATGCAGAAGCAAATGCACAAACTTGATACTATGATGATGAAGAAC GTTCGAAGAGCAGCGATTGACGCAGATTGTGTACTAGTTATTGTTGATGCATCCAAGACGCCTGAGAAGATTGATGAGGTGTTGGAAGAAGGCGGGAGTG GCCTCGGAGAGGATGTGCCTGTCTTGTTAGTTCTGAACAAAAAGGATCTCATCAAACCTGGTGAAATCGCAAAGAAACTTCAGTGGTATGAAAAATTTAC CAATGTCGACGAGGTCATACCCGTCAGTGGAAAGTTTGGTCATGGGGTGGAAGATGTCAAGCAATGGATTCTTTCTAAACTTCCAACTGGGCCTCCTTAC TATCCCAAGGACATCATTAGTGAGCACCCAGAGAGGTTCTTTGTTGCAGAAATAGTAAGAGAAAAGATCTTCATGCAATACCGCAACGAAGTTCCTTATT CATGTCAGGTAAATGTAGTAAGCTATAAAGCTAGGCCGGGAGCAAAAGATTTTATACAGGTGGAGATCCTTGTCGAGAAGAACTCTCAGAAGATCATCAT CCTAGGCAAAGATGGGAAGGCTATAAAATTACTAGCAACAGCAGCAAGACTTGACATTGAAGATTTCTTGCAGAAGAAAGTCTATATTGAGATGGAGGTG AAAGTAAGGGAGAATTGGCGGCAGGACGAAGCTCTTCTGAAGAACTATGGGTATGGCGGACAAATTCGAGCATTCTGA
AA sequence Show only first row Show all	>Lus10014289 pacid=23164674 polypeptide=Lus10014289 locus=Lus10014289.g ID=Lus10014289.BGIv1.0 annot-version=v1.0 MELASSFSAAFPADKFTLNSIPSFTISRHFCARNFSRATQIRIKATAGDFTSRKRNPLRRRLYSLNNQLLIDEQKLDEDDGDEEGQEEDEYDAAILSLSM KPDRTMALLDDYEMEELDYSTDPNHRSGFVAVLGKPNVGKSTLSNQMIGQKLSIVTDKPQTTRHRILGICSAPEYQIVLYDTPGVMQKQMHKLDTMMMKN VRRAAIDADCVLVIVDASKTPEKIDEVLEEGGSGLGEDVPVLLVLNKKDLIKPGEIAKKLQWYEKFTNVDEVIPVSGKFGHGVEDVKQWILSKLPTGPPY YPKDIISEHPERFFVAEIVREKIFMQYRNEVPYSCQVNVVSYKARPGAKDFIQVEILVEKNSQKIIILGKDGKAIKLLATAARLDIEDFLQKKVYIEMEV KVRENWRQDEALLKNYGYGGQIRAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66470			RNA binding;GTP binding (.1)		Lus10014289 [exp]	0	1
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	1.4	0.9873
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Lus10002916 [exp]	2.0	0.9752
AT5G54600			Translation protein SH3-like f...		Lus10038125 [exp]	2.0	0.9794
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10004319 [exp]	2.4	0.9730
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10016604 [exp]	3.0	0.9776
AT5G55220			trigger factor type chaperone ...		Lus10010250 [exp]	4.2	0.9688
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10015677 [exp]	4.6	0.9726
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10007111 [exp]	5.7	0.9643
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10041940 [exp]	6.7	0.9737
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10026571 [exp]	6.9	0.9634

Compare expression of checked genes

Lus10014289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.