Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50910 260 / 6e-82 unknown protein AT5G66480 192 / 6e-56 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025996 [exp] 716 / 0 AT3G50910 302 / 3e-98 unknown protein Lus10041772 [exp] 554 / 0 AT3G50910 313 / 3e-102 unknown protein Lus10028325 [exp] 552 / 0 AT3G50910 305 / 3e-99 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G022100 [exp] 348 / 1e-115 AT3G50910 240 / 5e-74 unknown protein Potri.005G120600 [exp] 343 / 1e-113 AT3G50910 230 / 6e-70 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014290 pacid=23164762 polypeptide=Lus10014290 locus=Lus10014290.g ID=Lus10014290.BGIv1.0 annot-version=v1.0 ATGCCTGCGTTTAGTGCTATAACGCTGGACAGGTTGTTGGAACCTGGAGCTTCCAAATCTGTCTACAAGTCTGTTCCTCGCAGTTCCGTTCCAGTTCCGA AGCCAAAGCCTCCACCTCGTCCTAAGCTGCAAAGGAGGAACAGTACATCAATCACAGAGAGGAGTCCTCATCGTCCACAGCTAACCCCATCACTGTATAC AACTCCTGAAGCAACTCCTGTCCCACCTGGTTCACCGAATTCTGATACCGCATCACCATATATCATCAACCACAAAAGAAGGGGCCCACGTCTTTCAAAG AGTGTTTCTGTAGATGGCATTGCATCTCAGAAGAAAGCCTTAGATAGAGAGGAAGTCAATGACTGCTCCAAGGGTCCTGAACTTCATGTAGAGCTCACTA GGGATCGGCCTGCTGCTTTGACTCATCTTGATTTTGATAAAGTGGAGCATAAGAAGGTAAGTCATGAGAGCCCAAAGGAAAAGGAACTTCCTAATGGTAT CATTAATCTGTCTACGGAAGCAGTTCATATCAATGGTCACCGTGATGGTGCAAAAGTGAGCAGTAACTCTAGGGATGCCTTTATGAAGGAAAAACATAGT CAGGGTGCACGTGGTAGCGATGTTGATGACTTTTTTTATCCACACGATTCAATGAGTCATGCTAGCACTACCGATGGTGAAGATAATGTTGGAAATTCTG CTAAACTGAGTAGTAGTACACAAATGGCAGAGTTTTTTGATGCATGGGAAGAATTATCAACTGAAAGTGGCCTGCAGTCTGCTCTGCACGATTTTCAAAC TGAACTGCGGGAGACAAGATTAAGTTTATTGATGGAGAAAGAGAAGCGCAGGCAGGCAGAGGATGCTCTGAAGAATATGCAAAGCCAATGGGATAGGATT AGGGAACAATTAGTTAATGCAGGGCTTTGTGTTCCCCCTTGTCCTATTGGTGTATCTGCGAGTGATGAGCCAATCAGTACTGATACTGCAGAGGAGCTGT GCCACCAGCTGGATACAATTCGCTTTGTATCCAATTCTATCGGAGGGGGCATTGCAAGAGCTGAGATGGAGGTGGAAATGGAAGGACAGATTGAGACAAA GAACTTTGAGATTGCCCGATTGGTTGACCGCCTTCATTACTATGAGGCTGTGAATCGAGAAATGACTCAAAGGAACCAAGAAGTCGTGGAATTGGCTCGT CGGAATAGGCATGTGCAGAAAAGGAGGCAACGATGGGTTTGGGGTTCCATTGCTGCTGCCATTACTCTTGGCAGTGCAGCTCTAGCGTGGTCTTATCTTC CATCAAGAGGAGGATCGCCTTCCAACAGCAGTTCCTTGGATACAGAACGGGACAGCTCATCGTCAGATTAA
AA sequence Show only first row Show all	>Lus10014290 pacid=23164762 polypeptide=Lus10014290 locus=Lus10014290.g ID=Lus10014290.BGIv1.0 annot-version=v1.0 MPAFSAITLDRLLEPGASKSVYKSVPRSSVPVPKPKPPPRPKLQRRNSTSITERSPHRPQLTPSLYTTPEATPVPPGSPNSDTASPYIINHKRRGPRLSK SVSVDGIASQKKALDREEVNDCSKGPELHVELTRDRPAALTHLDFDKVEHKKVSHESPKEKELPNGIINLSTEAVHINGHRDGAKVSSNSRDAFMKEKHS QGARGSDVDDFFYPHDSMSHASTTDGEDNVGNSAKLSSSTQMAEFFDAWEELSTESGLQSALHDFQTELRETRLSLLMEKEKRRQAEDALKNMQSQWDRI REQLVNAGLCVPPCPIGVSASDEPISTDTAEELCHQLDTIRFVSNSIGGGIARAEMEVEMEGQIETKNFEIARLVDRLHYYEAVNREMTQRNQEVVELAR RNRHVQKRRQRWVWGSIAAAITLGSAALAWSYLPSRGGSPSNSSSLDTERDSSSSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50910			unknown protein		Lus10014290 [exp]	0	1
AT5G01850			Protein kinase superfamily pro...		Lus10025236 [exp]	1.4	0.8580
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10004317 [exp]	1.4	0.8651
AT3G50910			unknown protein		Lus10025996 [exp]	2.0	0.8531
AT5G52530			dentin sialophosphoprotein-rel...		Lus10014955 [exp]	5.3	0.8389
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10001977 [exp]	12.0	0.8546
AT1G17820			Putative integral membrane pro...		Lus10018266 [exp]	12.2	0.8429
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021656 [exp]	13.1	0.7926
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10041917 [exp]	13.5	0.8389
AT4G24015			RING/U-box superfamily protein...		Lus10032418 [exp]	14.1	0.8436
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10022797 [exp]	15.0	0.8316

Compare expression of checked genes

Lus10014290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.