Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01050 329 / 6e-116 ATPPA1 pyrophosphorylase 1 (.1) AT2G46860 325 / 3e-114 ATPPA3 pyrophosphorylase 3 (.1) AT3G53620 321 / 6e-113 ATPPA4 pyrophosphorylase 4 (.1) AT4G01480 317 / 2e-111 ATPPA5 pyrophosphorylase 5 (.1) AT2G18230 316 / 1e-110 ATPPA2 pyrophosphorylase 2 (.1) AT5G09650 71 / 1e-14 ATPPA6 pyrophosphorylase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025999 [exp] 399 / 8e-144 AT1G01050 357 / 5e-127 pyrophosphorylase 1 (.1) Lus10041767 [exp] 355 / 4e-126 AT2G46860 359 / 5e-128 pyrophosphorylase 3 (.1) Lus10028320 [exp] 352 / 3e-125 AT2G46860 360 / 4e-128 pyrophosphorylase 3 (.1) Lus10024422 [exp] 325 / 3e-114 AT3G53620 385 / 3e-138 pyrophosphorylase 4 (.1) Lus10025311 [exp] 325 / 2e-112 AT3G53620 387 / 1e-136 pyrophosphorylase 4 (.1) Lus10030179 [exp] 317 / 6e-111 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10005139 [exp] 316 / 6e-111 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10037239 [exp] 71 / 2e-14 AT5G09650 446 / 1e-159 pyrophosphorylase 6 (.1) Lus10035653 [exp] 71 / 2e-14 AT5G09650 446 / 2e-159 pyrophosphorylase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G022700 [exp] 344 / 6e-122 AT1G01050 353 / 2e-125 pyrophosphorylase 1 (.1) Potri.014G107100 [exp] 327 / 3e-115 AT1G01050 404 / 1e-145 pyrophosphorylase 1 (.1) Potri.002G181300 [exp] 327 / 3e-115 AT1G01050 399 / 7e-144 pyrophosphorylase 1 (.1) Potri.006G082500 [exp] 318 / 1e-111 AT3G53620 392 / 8e-141 pyrophosphorylase 4 (.1) Potri.009G081200 [exp] 71 / 1e-14 AT5G09650 450 / 4e-161 pyrophosphorylase 6 (.1) Potri.001G286900 [exp] 68 / 1e-13 AT5G09650 451 / 2e-161 pyrophosphorylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00719 [flax] [poplar] Pyrophosphatase Inorganic pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10014292 pacid=23164772 polypeptide=Lus10014292 locus=Lus10014292.g ID=Lus10014292.BGIv1.0 annot-version=v1.0 ATGGATGAAAACGGTGAAAATAGCGGAAGATCCTCGCAGTATGCCCGTCCAGCACTTAATGAAAGGATTCTTTCTTCGATGACACGGAGATCTGTAGCAG CACATCCATGGCATGATCTGGAGATTGGACCTGGTGCTCCAGCAGTTTTCAACGTTGTCGTTGAAATAAGCAAAGGTAGCAAGGTTAAGTATGAGCTTGA CAAGAAATCTGGCCTTATAAAAGTTGATCGTATTCTCTACTCGTCAGTTGTGTATCCGCATAACTATGGTTTCATTCCTAGAACCCTTTGTGAGGATAGT GATCCTATGGATGTCCTGATACTGATGCAGGAGCCTGTCCTTCCTGGTACTTTTCTCCGTGCTCGTGCAATAGGATTAATGCCTATGATTGACCAGGGTG AGAAGGATGACAAAATCATAGCGGTATGTGCTGATGATCCTGATGTGCGTCATTACAGAGACATCAAGGAGCTTCCTCCTCATCGATTGGCTGAGATCCG TCGCTTTTTTGAGGAGTACAAGAAGAACGAGAACAAGAAAGTTGATGTAGAAGATTTCTTGCCACCAGAAGCTGCCGTTGATGCCATCAAGTATTCCATG GATCTCTATGCATCCTACATCGTTGAGAACTTGAGGCAGTAA
AA sequence Show only first row Show all	>Lus10014292 pacid=23164772 polypeptide=Lus10014292 locus=Lus10014292.g ID=Lus10014292.BGIv1.0 annot-version=v1.0 MDENGENSGRSSQYARPALNERILSSMTRRSVAAHPWHDLEIGPGAPAVFNVVVEISKGSKVKYELDKKSGLIKVDRILYSSVVYPHNYGFIPRTLCEDS DPMDVLILMQEPVLPGTFLRARAIGLMPMIDQGEKDDKIIAVCADDPDVRHYRDIKELPPHRLAEIRRFFEEYKKNENKKVDVEDFLPPEAAVDAIKYSM DLYASYIVENLRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Lus10014292 [exp]	0	1
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10031408 [exp]	8.7	0.8869
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10021515 [exp]	9.6	0.9110
AT4G27130			Translation initiation factor ...		Lus10027181 [exp]	9.9	0.9122
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10014614 [exp]	10.5	0.8590
AT5G66450			Phosphatidic acid phosphatase ...		Lus10028328 [exp]	10.9	0.8825
AT5G58950			Protein kinase superfamily pro...		Lus10011173 [exp]	16.5	0.8732
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Lus10018885 [exp]	19.1	0.8460
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Lus10001328 [exp]	23.0	0.8593
AT3G03610			ELMO/CED-12 family protein (.1...		Lus10009523 [exp]	23.4	0.8882
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10018663 [exp]	25.1	0.8808

Compare expression of checked genes

Lus10014292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.