Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G32440 94 / 6e-23 Ubiquitin system component Cue protein (.1.2.3) AT1G80040 85 / 1e-19 unknown protein AT5G02510 64 / 1e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026000 [exp] 362 / 6e-128 AT1G80040 121 / 1e-33 unknown protein Lus10039988 [exp] 110 / 7e-29 AT5G32440 272 / 1e-91 Ubiquitin system component Cue protein (.1.2.3) Lus10027700 [exp] 100 / 6e-25 AT5G32440 262 / 2e-87 Ubiquitin system component Cue protein (.1.2.3) Lus10039987 [exp] 98 / 5e-24 AT5G32440 255 / 1e-84 Ubiquitin system component Cue protein (.1.2.3) Lus10027699 [exp] 98 / 5e-24 AT5G32440 253 / 8e-84 Ubiquitin system component Cue protein (.1.2.3) Lus10025332 [exp] 71 / 3e-14 AT5G02510 152 / 4e-46 unknown protein Lus10024410 [exp] 68 / 2e-13 AT5G02510 149 / 8e-45 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G127200 [exp] 107 / 6e-28 AT5G32440 287 / 1e-97 Ubiquitin system component Cue protein (.1.2.3) Potri.006G066000 [exp] 105 / 5e-27 AT5G32440 241 / 3e-79 Ubiquitin system component Cue protein (.1.2.3) Potri.005G121100 [exp] 100 / 9e-26 AT1G80040 130 / 2e-37 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF02845 [flax] [poplar] CUE CUE domain
Representative CDS sequence Show only first row Show all	>Lus10014293 pacid=23164678 polypeptide=Lus10014293 locus=Lus10014293.g ID=Lus10014293.BGIv1.0 annot-version=v1.0 ATGGCAACTGCAACCCTCTGCACTCCACCATCAATCTGCGGAACCAAACGATTGCATCTCTTCGACGACGACGACAACTACGACGACAACCCATCTCCTT TCCCCAAGAAACGCCGCTTCACTCCTCCGGGTCTCGAACGCCTCCAGGCCAAATTCCCCTCCATGGAGGTTGCAGTTCTCGAGCTCGCCCTAGAAGAATG TGGCGGCAACATCGACGCCGCGATCCACCACCTCTGCCGCCTCTCCCTTCAAGAAGAAGAGGAAGAAACCGCTTCCAAACCTGACCCGACTCTGCCGGGA ACGAAAACCGATTCATCGGCTAGTAGCGGGACCCAGCAGTGGGCGGAGCTGCTAGTGACGGAGATGACGAAAGCGACGAGCGTTGACGATGCTAGGTCAC GCGCTGCTAAGTTATTGGAAGCTGTGGAGAAGGCGGTGGTGGAGAAGGAGGAGAGCGGCGGCGGCGGACTGAGGAAAAAGGTGGAGGTTTTGGGGAAGGA GAACGCATTGCTGAAACGCGCGGTGGCGATTCTGTACGAGCGACAGAAAGACCAGAAAGAGAAGGAAGCTGAATCTGTGGCCCTCGGGAAATTGGTGGCT GAATACCATCAGAAGCTCAAAACCCTAGAAGCTAACAATTTCGCCCTTTCCATGCACTTGAATCGTGCTCTCTGCGGCGGCTCAATTTCCGGCCACTGCG GCCCGGATGTCTTCTGA
AA sequence Show only first row Show all	>Lus10014293 pacid=23164678 polypeptide=Lus10014293 locus=Lus10014293.g ID=Lus10014293.BGIv1.0 annot-version=v1.0 MATATLCTPPSICGTKRLHLFDDDDNYDDNPSPFPKKRRFTPPGLERLQAKFPSMEVAVLELALEECGGNIDAAIHHLCRLSLQEEEEETASKPDPTLPG TKTDSSASSGTQQWAELLVTEMTKATSVDDARSRAAKLLEAVEKAVVEKEESGGGGLRKKVEVLGKENALLKRAVAILYERQKDQKEKEAESVALGKLVA EYHQKLKTLEANNFALSMHLNRALCGGSISGHCGPDVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80040			unknown protein		Lus10014293 [exp]	0	1
AT5G52370			unknown protein		Lus10040713 [exp]	10.3	0.8895
AT4G03240		ATFH, FH	frataxin homolog (.1)		Lus10033750 [exp]	11.8	0.8776
AT2G20820			unknown protein		Lus10031625 [exp]	14.8	0.8864
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10043059 [exp]	16.8	0.8813
AT1G24265			Protein of unknown function (D...		Lus10011347 [exp]	26.1	0.8611
AT2G33730			P-loop containing nucleoside t...		Lus10015187 [exp]	27.3	0.8675
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10041105 [exp]	27.4	0.8613
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10030482 [exp]	34.0	0.8699
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10037680 [exp]	35.5	0.8669
AT5G13780			Acyl-CoA N-acyltransferases (N...		Lus10016378 [exp]	40.3	0.8692

Compare expression of checked genes

Lus10014293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.