Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12920 793 / 0 ERF1-2 eukaryotic release factor 1-2 (.1) AT3G26618 789 / 0 ERF1-3 eukaryotic release factor 1-3 (.1) AT5G47880 763 / 0 ERF1-1 eukaryotic release factor 1-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026003 [exp] 865 / 0 AT1G12920 808 / 0.0 eukaryotic release factor 1-2 (.1) Lus10028312 [exp] 835 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10025863 [exp] 834 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10038236 [exp] 834 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10041760 [exp] 820 / 0 AT1G12920 783 / 0.0 eukaryotic release factor 1-2 (.1) Lus10042947 [exp] 796 / 0 AT3G26618 839 / 0.0 eukaryotic release factor 1-3 (.1) Lus10032447 [exp] 795 / 0 AT3G26618 843 / 0.0 eukaryotic release factor 1-3 (.1) Lus10028313 [exp] 184 / 9e-57 AT1G12920 171 / 2e-52 eukaryotic release factor 1-2 (.1) Lus10031479 [exp] 173 / 9e-51 AT5G47880 192 / 4e-58 eukaryotic release factor 1-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G141000 [exp] 806 / 0 AT3G26618 841 / 0.0 eukaryotic release factor 1-3 (.1) Potri.003G159000 [exp] 800 / 0 AT3G26618 785 / 0.0 eukaryotic release factor 1-3 (.1) Potri.001G072000 [exp] 795 / 0 AT3G26618 793 / 0.0 eukaryotic release factor 1-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF03463 [flax] [poplar] eRF1_1 eRF1 domain 1 CL0101 [flax] [poplar] PELOTA PF03465 [flax] [poplar] eRF1_3 eRF1 domain 3 CL0267 [flax] [poplar] S11_L18p PF03464 [flax] [poplar] eRF1_2 eRF1 domain 2
Representative CDS sequence Show only first row Show all	>Lus10014295 pacid=23164706 polypeptide=Lus10014295 locus=Lus10014295.g ID=Lus10014295.BGIv1.0 annot-version=v1.0 ATGGCAGATAGCGAGGACAAGAACATTGAGATCTGGAAGATCAAGAAGCTTATTAAATCCCTGGAAGCTGCCCGAGGCAATGGGACCAGCATGATTTCCC TTATCATACCCCCTCGTGATCAGATTTCTCGTATTGCGAAGATGCTTGGTGATGAATATGGTACTGCTTCTAATATTAAGAGTAGGGTTAATCGTCAGTC TGTACTTGGTGCCATCACATCTGCTCAGCAGAGGCTGAAGCTTTACAACAAGGTTCCTACTAATGGACTTGTTCTCTACACTGGAACTATTGTCACTGAT GATGGAAAGGAGAAAAAGGTCACCATGGACTTTGAGCCTTTTAGGCCGATTAATGCATCTCTCTACCTCTGTGACAACAAGTTTCATACTGAAGCTTTGA ATGAACTCCTGGAGTCTGATGACAAATTTGGTTTCATTATCATGGATGGTAACGGTACCCTGTTTGGAACTCTTAGTGGGAACACCAGAGAAATTCTGCA CAAGTTCTCGGTTGATCTGCCAAAGAAACACGGAAGAGGAGGACAGTCAGCACTTCGATTTGCCAGGCTCCGTATGGAGAAGCGCCACAACTATGTGAGG AAGACAGCTGAACTTGCAACCCAATTTTTTATTGACCCAGCCACCAGCCAGCCTAATGTATCAGGTCTTATACTTGCTGGATCTGCTGACTTCAAGACTG AGCTGAGTCAGTCAGATATGTTTGATGCTCGACTTCAGGTTAAGATTCTGAACGTGGTTGATGTGTCCTATGGAGGGGAGAATGGATTTAACCAGGCAAT CGAGCTTTCATCTGAGATTTTGTCCAATGTGAAGTTTATCCAGGAGAAGAAGCTGATAATGAAATACTTTGAAGAGATTAGTCAAGATACTGGAAAATAT GTCTTTGGCGTGGATGACACTTTGACAGCTTTGGATATGGGTGCCGTTGAAATTCTTATTGTTTGGGAGAATTTGGAGGTTAATAGGTATGAGTTGAAGA ACAGTTCAACTGGTGAAATTGTCGTAAAACATATGACTAAGGAGCAAGAGTCCAATGAGAATAGCTTTAGGGATTCAGCCACCTCAGCAGAACTAGAAGT TCAGGAGAAGATGCCTCTGCTTGAGTGGTTTGCTAATGAGTACAAGCGATTTGGTTGCACACTCGAGTTCGTCACGAACAAGTCACAAGAAGGGTCACAG TTCTGCAGGGGATTTGGTGGTATTGGTGGCATTCTGCGTTACCAAGTGGACATGAGATCATTTGATGAGCTTTCTGATGAAGAAGTTTTGGATGATTCTG AATAG
AA sequence Show only first row Show all	>Lus10014295 pacid=23164706 polypeptide=Lus10014295 locus=Lus10014295.g ID=Lus10014295.BGIv1.0 annot-version=v1.0 MADSEDKNIEIWKIKKLIKSLEAARGNGTSMISLIIPPRDQISRIAKMLGDEYGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPTNGLVLYTGTIVTD DGKEKKVTMDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIIMDGNGTLFGTLSGNTREILHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVR KTAELATQFFIDPATSQPNVSGLILAGSADFKTELSQSDMFDARLQVKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKKLIMKYFEEISQDTGKY VFGVDDTLTALDMGAVEILIVWENLEVNRYELKNSSTGEIVVKHMTKEQESNENSFRDSATSAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQ FCRGFGGIGGILRYQVDMRSFDELSDEEVLDDSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10014295 [exp]	0	1
AT3G51500			unknown protein		Lus10017918 [exp]	10.9	0.8396
AT5G61970			signal recognition particle-re...		Lus10043202 [exp]	12.0	0.8323
AT3G47160			RING/U-box superfamily protein...		Lus10001209 [exp]	13.3	0.8507
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Lus10021544 [exp]	13.9	0.8419
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10028187 [exp]	20.3	0.8453
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004551 [exp]	20.5	0.8500
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10003846 [exp]	23.7	0.8401
AT1G72660			P-loop containing nucleoside t...		Lus10037676 [exp]	31.9	0.8237
AT3G53630			unknown protein		Lus10024421 [exp]	32.7	0.8178
AT1G13570			F-box/RNI-like superfamily pro...		Lus10030920 [exp]	37.5	0.8419

Compare expression of checked genes

Lus10014295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.