Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18250 248 / 1e-84 ATCOAD 4-phosphopantetheine adenylyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026004 [exp] 345 / 8e-123 AT2G18250 267 / 2e-92 4-phosphopantetheine adenylyltransferase (.1) Lus10028311 [exp] 275 / 4e-95 AT2G18250 265 / 1e-91 4-phosphopantetheine adenylyltransferase (.1) Lus10041759 [exp] 274 / 1e-94 AT2G18250 270 / 4e-94 4-phosphopantetheine adenylyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G121200 [exp] 242 / 5e-82 AT2G18250 268 / 6e-93 4-phosphopantetheine adenylyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01467 [flax] [poplar] CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence Show only first row Show all	>Lus10014296 pacid=23164738 polypeptide=Lus10014296 locus=Lus10014296.g ID=Lus10014296.BGIv1.0 annot-version=v1.0 ATGGGTGTTCAGGATGAATCGGCCGTCAACTACACTATTTCGCCGCCGAACACGTATGGAGCAGTTGTCCTCGGTGGCACGTTTGATAGGTTACACGACG GCCACCGCCTTTTCCTCAAGGCGGCAGCGGAGCTGGCAAGGGAGATAGTTGTGGTTGGAGTTTGCGATGGCCCTATGCTCACTAACAAAAAGTTCATTTT ACCGGTTAAAATTGCAATCCCTGATCTTAGCCTGGTTGAAGTTCGAATGATTGACAGAATCCGGTTCTATTTGTTTCAGTTTCGAGACCTGATAGAGCCT ATAGAGGTCAGGATACAGAATGTTGACAACTATATCAAGTCTATCAAACCAGAGCTCACTGTGCAAGCTGAACCAATTACTGATCCGTACGGACCTTCAA TTGTCCTCAAAGATTTGGAAGCTATAGTTGTTAGCAAAGAGACTGTACCAGGTGGCCTGGCAGTGAACAGGAAGAGAGCTGAGAGAGGACTTCCACAGCT CAAGGTTGAAGTTGTGGACCTAGTTTCTGAAGGGTCCACTGGGGAAAAACTGAGCTCTTCAACGTTGAGAAGACTTGAAGTTGAGAAGGCAAAACAACAA CAAGCAGCTGATGGAATCATCAGCCCACTCGGTGATCCTTAG
AA sequence Show only first row Show all	>Lus10014296 pacid=23164738 polypeptide=Lus10014296 locus=Lus10014296.g ID=Lus10014296.BGIv1.0 annot-version=v1.0 MGVQDESAVNYTISPPNTYGAVVLGGTFDRLHDGHRLFLKAAAELAREIVVVGVCDGPMLTNKKFILPVKIAIPDLSLVEVRMIDRIRFYLFQFRDLIEP IEVRIQNVDNYIKSIKPELTVQAEPITDPYGPSIVLKDLEAIVVSKETVPGGLAVNRKRAERGLPQLKVEVVDLVSEGSTGEKLSSSTLRRLEVEKAKQQ QAADGIISPLGDP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10014296 [exp]	0	1
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Lus10006708 [exp]	6.0	0.9235
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10009398 [exp]	6.6	0.9111
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10038903 [exp]	9.3	0.8789
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Lus10037292 [exp]	9.5	0.9098
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10000052 [exp]	11.9	0.9249
AT2G43320			S-adenosyl-L-methionine-depend...		Lus10015953 [exp]	12.3	0.9220
AT3G01850			Aldolase-type TIM barrel famil...		Lus10035219 [exp]	12.4	0.9233
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10007925 [exp]	14.4	0.9134
AT5G03700			D-mannose binding lectin prote...		Lus10023868 [exp]	14.7	0.9206
AT5G11970			Protein of unknown function (D...		Lus10017155 [exp]	15.0	0.9061

Compare expression of checked genes

Lus10014296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.