Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18260 308 / 1e-104 ATSYP112, SYP112 syntaxin of plants 112 (.1) AT1G61290 189 / 2e-58 ATSYP124, SYP124 syntaxin of plants 124 (.1) AT4G03330 187 / 2e-57 ATSYP123, SYP123 syntaxin of plants 123 (.1) AT1G08560 182 / 1e-55 KN, ATSYP111, SYP111 KNOLLE, syntaxin of plants 111 (.1) AT1G11250 179 / 1e-54 ATSYP125, SYP125 syntaxin of plants 125 (.1) AT3G11820 179 / 5e-54 PEN1, AT-SYR1, ATSYR1, ATSYP121, SYP121 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) AT3G52400 161 / 4e-47 ATSYP122, SYP122 syntaxin of plants 122 (.1) AT3G03800 143 / 2e-40 ATSYP131, SYP131 syntaxin of plants 131 (.1) AT5G08080 130 / 2e-35 ATSYP132, SYP132 syntaxin of plants 132 (.1.2.3) AT5G46860 45 / 4e-05 SGR3, ATVAM3, ATSYP22, VAM3 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026005 [exp] 523 / 0 AT2G18260 327 / 2e-112 syntaxin of plants 112 (.1) Lus10042527 [exp] 197 / 5e-61 AT1G08560 391 / 2e-137 KNOLLE, syntaxin of plants 111 (.1) Lus10021988 [exp] 195 / 2e-60 AT1G08560 388 / 2e-136 KNOLLE, syntaxin of plants 111 (.1) Lus10013589 [exp] 190 / 2e-58 AT3G11820 437 / 2e-155 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10029373 [exp] 186 / 9e-57 AT3G11820 441 / 4e-157 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10021263 [exp] 186 / 1e-56 AT3G11820 436 / 3e-154 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10016173 [exp] 182 / 4e-55 AT3G11820 432 / 2e-152 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10020089 [exp] 180 / 8e-54 AT1G61290 467 / 2e-166 syntaxin of plants 124 (.1) Lus10006735 [exp] 176 / 5e-53 AT1G61290 491 / 3e-177 syntaxin of plants 124 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G023100 [exp] 328 / 5e-113 AT2G18260 352 / 3e-122 syntaxin of plants 112 (.1) Potri.005G121300 [exp] 328 / 1e-112 AT2G18260 356 / 6e-124 syntaxin of plants 112 (.1) Potri.009G117900 [exp] 265 / 3e-88 AT2G18260 298 / 4e-101 syntaxin of plants 112 (.1) Potri.013G053200 [exp] 200 / 2e-62 AT1G08560 430 / 8e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.004G035400 [exp] 191 / 4e-59 AT1G61290 490 / 8e-177 syntaxin of plants 124 (.1) Potri.011G043700 [exp] 189 / 2e-58 AT1G61290 456 / 3e-163 syntaxin of plants 124 (.1) Potri.019G030800 [exp] 186 / 4e-57 AT1G08560 431 / 3e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.016G068600 [exp] 182 / 1e-55 AT3G11820 421 / 5e-149 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.006G202200 [exp] 172 / 2e-51 AT3G11820 412 / 3e-145 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.019G036700 [exp] 149 / 1e-42 AT3G03800 391 / 1e-137 syntaxin of plants 131 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00804 [flax] [poplar] Syntaxin Syntaxin CL0445 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10014297 pacid=23164700 polypeptide=Lus10014297 locus=Lus10014297.g ID=Lus10014297.BGIv1.0 annot-version=v1.0 ATGACGAAATCGTTCCAAAATTACGTGGAACTCAAGAAGCAAGCCAGAGAGGACACGGCAGCCGAACTCGCCGCCGCCGGCGAACTATCTCTCACCGCCG CCGGCGAACTATCTCTCACCGCCGACGAACCCAACTTAGCAGAGTTCTTCCTCAAAGTGGATTCAATCAAGACCGATACAGAAGAGATAACCAATCTCTT ATCCGAACTACAAACTCTAAACGAAGAAACCAAATCTTCCCACAGCGCCAAAATCCTCCGAGGGTTGAGAGACAGAATCCAATCGGACATTGTAACCGTC CTTCGAAAAGCCAAGGACGTCAAGAGCAGCCTGGAAGCTTTGGAGAAGTCCAACATATCCAACAGAGGAAAATCACATCTCTACGCAGAAGGAAGCCCTG TGGACAGGACTAGGGTTTCGGTGACGAACGGGCTGAGAGCAAAATTCAGGGAGGCAATGAACGAGTTCCTCTTTCTAAGGGAGAAGATCCTGTCCGATTA CAAAAAGGATCTAAAGAGGAAGTACTTTGTGGCGACGGGTGAAGAGGCGAACGAGGAGACGATCCAAAATATGGTTTCAGGGAAATGGGGATTTGAGTCG TTGGTGGTGGAGAAGAAAGACAAAGAGATGGATTTGCCTTGCAAAGAGAGGCATCAGGCTGTGTTGGATATACAGAGGAGCCTGACGAAGCTGCATCAGG TTTTTCTGGACATGGCGGTTTTGGTGGATGCTCAGGGTGAGAAGATTGATGATATTGAAGAGAATGTGGCTAAGGCGAGTGAGTTTGTTGCTGGTGGGAC TGATGCATTGTACGACGCAAAGCAGATGAAGGATAAGAAGAGGGCTACTTGCACTTGTTGGTGGGTGGTTGCAGCGATTTTCGTTGTTCTCTTGGTGTGC CTGATCTCATTGCTGGCATCATGA
AA sequence Show only first row Show all	>Lus10014297 pacid=23164700 polypeptide=Lus10014297 locus=Lus10014297.g ID=Lus10014297.BGIv1.0 annot-version=v1.0 MTKSFQNYVELKKQAREDTAAELAAAGELSLTAAGELSLTADEPNLAEFFLKVDSIKTDTEEITNLLSELQTLNEETKSSHSAKILRGLRDRIQSDIVTV LRKAKDVKSSLEALEKSNISNRGKSHLYAEGSPVDRTRVSVTNGLRAKFREAMNEFLFLREKILSDYKKDLKRKYFVATGEEANEETIQNMVSGKWGFES LVVEKKDKEMDLPCKERHQAVLDIQRSLTKLHQVFLDMAVLVDAQGEKIDDIEENVAKASEFVAGGTDALYDAKQMKDKKRATCTCWWVVAAIFVVLLVC LISLLAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18260		ATSYP112, SYP11...	syntaxin of plants 112 (.1)		Lus10014297 [exp]	0	1
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Lus10028726 [exp]	14.7	0.8489
AT3G18680			Amino acid kinase family prote...		Lus10033492 [exp]	15.3	0.8368
AT1G55140			Ribonuclease III family protei...		Lus10037645 [exp]	18.1	0.8481
AT5G23690			Polynucleotide adenylyltransfe...		Lus10036013 [exp]	20.9	0.8270
AT1G10522			unknown protein		Lus10030655 [exp]	29.3	0.8301
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10022866 [exp]	36.7	0.7385
AT1G69935		SHW1	short hypocotyl in white light...		Lus10013285 [exp]	39.5	0.8190
					Lus10006809 [exp]	39.5	0.8148
AT5G23690			Polynucleotide adenylyltransfe...		Lus10016719 [exp]	40.2	0.8132
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10019417 [exp]	41.6	0.8065

Compare expression of checked genes

Lus10014297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.