Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18280 468 / 1e-164 TUB AtTLP2 tubby like protein 2 (.1.2) AT1G47270 411 / 5e-142 TUB AtTLP6 tubby like protein 6 (.1.2) AT2G47900 391 / 3e-134 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT1G25280 391 / 1e-133 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT1G76900 380 / 2e-129 TUB AtTLP1 tubby like protein 1 (.1.2) AT1G43640 347 / 2e-116 TUB AtTLP5 tubby like protein 5 (.1) AT3G06380 337 / 3e-113 TUB ATTLP9 tubby-like protein 9 (.1) AT5G18680 331 / 6e-111 TUB AtTLP11 tubby like protein 11 (.1) AT1G53320 305 / 7e-101 TUB AtTLP7 tubby like protein 7 (.1) AT1G61940 78 / 4e-16 TUB AtTLP4 tubby like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026007 [exp] 803 / 0 AT2G18280 471 / 6e-166 tubby like protein 2 (.1.2) Lus10028309 [exp] 678 / 0 AT2G18280 481 / 1e-169 tubby like protein 2 (.1.2) Lus10041757 [exp] 674 / 0 AT2G18280 478 / 9e-169 tubby like protein 2 (.1.2) Lus10033209 [exp] 469 / 1e-164 AT1G47270 471 / 1e-165 tubby like protein 6 (.1.2) Lus10033208 [exp] 448 / 1e-156 AT1G47270 476 / 1e-167 tubby like protein 6 (.1.2) Lus10010833 [exp] 448 / 1e-156 AT1G47270 469 / 3e-165 tubby like protein 6 (.1.2) Lus10010645 [exp] 447 / 3e-156 AT1G47270 471 / 6e-166 tubby like protein 6 (.1.2) Lus10018884 [exp] 386 / 8e-132 AT1G76900 596 / 0.0 tubby like protein 1 (.1.2) Lus10028579 [exp] 382 / 3e-130 AT1G25280 597 / 0.0 tubby like protein 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G121600 [exp] 587 / 0 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.007G023400 [exp] 581 / 0 AT2G18280 519 / 0.0 tubby like protein 2 (.1.2) Potri.002G034600 [exp] 476 / 3e-167 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2) Potri.005G228500 [exp] 462 / 8e-162 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.005G192300 [exp] 405 / 1e-139 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.005G192400 [exp] 401 / 7e-138 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.002G068200 [exp] 399 / 4e-137 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.008G195200 [exp] 385 / 4e-132 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.010G031000 [exp] 383 / 3e-131 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.001G390200 [exp] 313 / 7e-104 AT1G53320 516 / 0.0 tubby like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF01167 [flax] [poplar] Tub Tub family CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10014299 pacid=23164768 polypeptide=Lus10014299 locus=Lus10014299.g ID=Lus10014299.BGIv1.0 annot-version=v1.0 ATGCCACCTTTCAAGAGCATTGTCCGCGAGCTGAAGGAGATGAAAGACGGGGTTGGGAGTAGGTCTCGGCGGGGAAAGGTGGAAGGGAAACGCTGGCGGG GAAGCAGGGCGAGGTCGCATATAGCTCCTGATGAAACTTCGTTGGTCGAGAATGAAGAATGTAGTGACGAACAAGGACAGTGGGCGGATTTGCCACCCGA GTTGCTTCTTGATATTATCAGGAGGGTCGAAGAGACCGAGTCCTCGTGGCCTGATCGTGCTGTCGTTGTTCATTGTGCTACGGTTTGTAAGTCGTGGAGG GAAGTAACGAGGGAGATTGTCAAAACACCTGAGCAGTGTGGATTGCTCACATTCCCTATCTCATTGAAGCAGCCCGGTCCCCGTGAGGCTCCTATACATT GCTACATAAGAAGGGATCCTGCTACTTCCACGTTTTTGTTGTTTCACGGATTGATGCCTTCTGAGGGTGAGAAGGATAAATTGCTTCTGGCAGCAAGAAG AATCAGAAGGGCAACATGCACAGATTTTGTGATATCTTTGGCTCCGAATGATTTCTCCCGGTCGAGCAACAACTACATTGGTAGACTCAGATCGAACTTT TTGGGGACAAAGTTCACCATCTTGGATAAGCAATCAAGTCATGAGGTTCCAATGCAGTTGGCCAGGTGGACGAGTCGCAAATTGCATTCTGGAAGAGTTT CTTCAAGGACCCCTGCATCGAACTACGCCATAGGCACGATTAATTACGAGCTGAACGTTCTCCGCACTAGAGGGCCGAGAAGAATGCACTGTGTCATCAA TTCAATTCCCGTCTCTTCCATGGAGGAAGGTGGGAGTGCTCCAACAATAACATCGTTGCCCGAGGCAGCAGCCGACGAACAGTTTTCTCCTTCACCTGTC TCCAAAGGGAAGGGACCTGGATCAGACGTCAGTTTCACCAGCCCATCAGAGTCGCCGACGATAATCCCTGGCTCCGAAGAGCCGCTAGTCCTGAAAAATA GGGCTCCTAGGTGGCATGAGCAGCTTCAGTGCTGGTGCTTGAATTTCAAGGGACGTGTTACTGTTGCTTCCGTCAAGAATTTCCAACTTTCGGCTGCATT TGAACCGCATCATAATGTGCCGGCTGAAGAACACGAAAGGGTTCTCCTGCAATTCGGGAAAATCGGAAAGGACATTTTCACCATGGACTATAGCTACCCG CTGTCTGCGTTTCAAGCGTTTGCAATCTGCCTCAGCAGCTTTGACACCAAACCAGCCTGTGAATGA
AA sequence Show only first row Show all	>Lus10014299 pacid=23164768 polypeptide=Lus10014299 locus=Lus10014299.g ID=Lus10014299.BGIv1.0 annot-version=v1.0 MPPFKSIVRELKEMKDGVGSRSRRGKVEGKRWRGSRARSHIAPDETSLVENEECSDEQGQWADLPPELLLDIIRRVEETESSWPDRAVVVHCATVCKSWR EVTREIVKTPEQCGLLTFPISLKQPGPREAPIHCYIRRDPATSTFLLFHGLMPSEGEKDKLLLAARRIRRATCTDFVISLAPNDFSRSSNNYIGRLRSNF LGTKFTILDKQSSHEVPMQLARWTSRKLHSGRVSSRTPASNYAIGTINYELNVLRTRGPRRMHCVINSIPVSSMEEGGSAPTITSLPEAAADEQFSPSPV SKGKGPGSDVSFTSPSESPTIIPGSEEPLVLKNRAPRWHEQLQCWCLNFKGRVTVASVKNFQLSAAFEPHHNVPAEEHERVLLQFGKIGKDIFTMDYSYP LSAFQAFAICLSSFDTKPACE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10014299 [exp]	0	1
AT5G01970			unknown protein		Lus10031947 [exp]	23.2	0.7962
AT1G26940			Cyclophilin-like peptidyl-prol...		Lus10037197 [exp]	25.0	0.7890
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10001203 [exp]	30.3	0.7811
AT1G28100			unknown protein		Lus10002573 [exp]	37.4	0.7773
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10026007 [exp]	38.6	0.7383
AT1G64970		VTE4, TMT1, G-T...	VITAMIN E DEFICIENT 4, gamma-t...		Lus10009537 [exp]	40.2	0.7819
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10001304 [exp]	69.1	0.7766
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10009987 [exp]	74.2	0.7482
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10030025 [exp]	104.0	0.7651
AT1G01770			unknown protein		Lus10036349 [exp]	139.3	0.7306

Compare expression of checked genes

Lus10014299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.