Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36540 170 / 1e-50 bHLH bHLH058, BEE2 BR enhanced expression 2 (.1.2) AT2G18300 164 / 3e-48 bHLH bHLH064, HBI1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G34530 162 / 3e-47 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT3G23690 151 / 6e-43 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68920 153 / 1e-42 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G26260 147 / 1e-41 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT3G07340 149 / 3e-41 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G59640 143 / 8e-41 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT5G50915 141 / 6e-40 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G10120 142 / 2e-39 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026008 [exp] 461 / 6e-165 AT2G18300 168 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10023562 [exp] 165 / 1e-48 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10040448 [exp] 163 / 8e-48 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Lus10003172 [exp] 149 / 2e-42 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10013284 [exp] 145 / 8e-42 AT1G59640 303 / 3e-104 BIG PETAL UB, BIG PETAL P (.1.2) Lus10021968 [exp] 146 / 1e-41 AT3G23690 163 / 5e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10013052 [exp] 150 / 2e-41 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10041261 [exp] 145 / 3e-41 AT3G23690 172 / 3e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030807 [exp] 144 / 3e-41 AT1G59640 300 / 6e-103 BIG PETAL UB, BIG PETAL P (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G023600 [exp] 176 / 2e-52 AT2G18300 182 / 3e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G121850 [exp] 166 / 2e-48 AT4G34530 177 / 3e-52 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.004G156000 [exp] 162 / 1e-46 AT4G34530 206 / 1e-62 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.009G117300 [exp] 161 / 4e-46 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.010G136100 [exp] 154 / 2e-42 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.014G148900 [exp] 153 / 3e-42 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G235400 [exp] 153 / 4e-42 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G248500 [exp] 152 / 9e-42 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G113200 [exp] 152 / 1e-41 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.008G190800 [exp] 145 / 2e-41 AT1G59640 230 / 2e-75 BIG PETAL UB, BIG PETAL P (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10014300 pacid=23164752 polypeptide=Lus10014300 locus=Lus10014300.g ID=Lus10014300.BGIv1.0 annot-version=v1.0 ATGCCATCTCAGGAACACACATCTTGCATGGAGGACATGAGTGTATTAGAGAGACAGTCAGCAAGGTTCAAATGGCTTCTGCAGCAGCAGCAATCCAAAG ATACTAGCTTTATCATGCCTCCTCAGTTTCATCATCTCCTACTCTCTTCAGGATTTGAGTTCCTTTCTCCGGACCAAATCGCGAGCCATCCTGATCACTG TCTCTCCACAAGTTCAAACAAGAGGAAAACAGAGGTTGGAAGGGGGGAGTACAGAGTGAAGAAGAGAGTCAAAGGAGAAAGGGAGATGGCGGAGTGTTCT AGTGGAACCAGGAGTACTGAAACAGAGAAAATTTGTAAAGATTCAGGAGCTGAGAAATCAGAGTATATTCACGTCAGGGCGCGTAGGGGACAGGCGACTG ATAGCCACAGCTTGGCTGAAAGGGCGAGGCGGGAAAAAATCAGCAGGAAAATGAAGTATCTGCAGGATTTAGTACCTGGCTGCAACAAGATTACTGGAAG GGCAGGGATGTTGGATGAGATCATCAATTATGTTCAGTCCCTCCAGCGCCAGGTTGAGTTCTTGTCAATGAAACTTGCAGCTGTGAGCCCAGGAATGGAG TTCGGCAGTGATAAGCTTCCTGGGAAAGAGAAACTGACATGGAACGATTTCTTATGCAAAACACCATCGAAGTTTCAAGCCTACGGGAGTTTTCCAACAG CGATCAGCAGCGTATTCCCAGGTGCAGCAGCCGCAAGTTTGGCCCAACTCCATCACCTTGCGGCGAGCAGGGAGCTCGAGATCCTGAATAAGCATCACAG CCAGCTTCCTTCTTCCCCAGAAGAAACCCCAACATCCTCCACTTTCATTCCTGAACTCTGTGTCGAATCTTCCTGTTACCCGAGGGAACAACAGAAGCTG TCTGGAACAGAATCAATCTCAGATGCGATATATCCAACTTTTGTTGCCTGA
AA sequence Show only first row Show all	>Lus10014300 pacid=23164752 polypeptide=Lus10014300 locus=Lus10014300.g ID=Lus10014300.BGIv1.0 annot-version=v1.0 MPSQEHTSCMEDMSVLERQSARFKWLLQQQQSKDTSFIMPPQFHHLLLSSGFEFLSPDQIASHPDHCLSTSSNKRKTEVGRGEYRVKKRVKGEREMAECS SGTRSTETEKICKDSGAEKSEYIHVRARRGQATDSHSLAERARREKISRKMKYLQDLVPGCNKITGRAGMLDEIINYVQSLQRQVEFLSMKLAAVSPGME FGSDKLPGKEKLTWNDFLCKTPSKFQAYGSFPTAISSVFPGAAAASLAQLHHLAASRELEILNKHHSQLPSSPEETPTSSTFIPELCVESSCYPREQQKL SGTESISDAIYPTFVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10014300 [exp]	0	1
AT5G18020			SAUR-like auxin-responsive pro...		Lus10039020 [exp]	1.4	0.9264
AT5G23160			unknown protein		Lus10013437 [exp]	1.4	0.9611
AT3G06070			unknown protein		Lus10034044 [exp]	6.7	0.9226
AT5G18030			SAUR-like auxin-responsive pro...		Lus10027317 [exp]	8.2	0.9150
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039487 [exp]	9.5	0.8940
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10034227 [exp]	10.0	0.8682
AT3G06070			unknown protein		Lus10010508 [exp]	10.2	0.8654
AT1G23965			unknown protein		Lus10030844 [exp]	10.6	0.8912
AT5G44680			DNA glycosylase superfamily pr...		Lus10036248 [exp]	11.4	0.8872
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10024853 [exp]	12.6	0.8778

Compare expression of checked genes

Lus10014300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.