Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75250 102 / 7e-30 MYB RSM3, ATRL6 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) AT4G39250 101 / 2e-29 MYB RSM2, ATRL1 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) AT2G21650 93 / 4e-26 MYB RSM1, ATRL2, MEE3 RADIALIS-LIKE SANT/MYB 1, MATERNAL EFFECT EMBRYO ARREST 3, ARABIDOPSIS RAD-LIKE 2, Homeodomain-like superfamily protein (.1) AT1G19510 92 / 8e-26 MYB RSM4, ATRL5 RADIALIS-LIKE SANT/MYB 4, RAD-like 5 (.1) AT2G18328 87 / 3e-24 MYB ATRL4 RAD-like 4 (.1) AT5G04760 77 / 1e-18 MYB Duplicated homeodomain-like superfamily protein (.1) AT4G36570 72 / 3e-18 MYB ATRL3 RAD-like 3 (.1) AT5G58900 71 / 6e-16 MYB Homeodomain-like transcriptional regulator (.1) AT2G38090 71 / 8e-16 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT3G11280 70 / 1e-15 MYB Duplicated homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026009 [exp] 173 / 5e-58 AT1G75250 103 / 1e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10041752 [exp] 138 / 3e-44 AT1G75250 103 / 2e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10028306 [exp] 131 / 1e-41 AT1G75250 103 / 1e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10033212 [exp] 110 / 2e-32 AT1G75250 107 / 2e-31 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10007152 [exp] 108 / 3e-32 AT1G75250 113 / 3e-34 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10010831 [exp] 107 / 1e-31 AT1G75250 108 / 6e-32 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10002538 [exp] 107 / 1e-31 AT1G75250 112 / 1e-33 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10023568 [exp] 107 / 1e-31 AT4G39250 123 / 5e-38 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Lus10040453 [exp] 105 / 8e-31 AT2G21650 115 / 4e-35 RADIALIS-LIKE SANT/MYB 1, MATERNAL EFFECT EMBRYO ARREST 3, ARABIDOPSIS RAD-LIKE 2, Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G122200 [exp] 137 / 9e-44 AT4G39250 112 / 3e-34 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.007G023800 [exp] 128 / 2e-40 AT1G75250 116 / 2e-35 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.009G117200 [exp] 117 / 1e-35 AT4G39250 109 / 1e-32 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.004G155866 [exp] 114 / 2e-34 AT1G75250 113 / 5e-34 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.004G155400 [exp] 111 / 2e-33 AT1G75250 124 / 4e-38 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.009G116600 [exp] 108 / 2e-32 AT4G39250 120 / 4e-37 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.005G228000 [exp] 105 / 3e-31 AT1G75250 115 / 5e-35 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.002G260000 [exp] 105 / 5e-31 AT1G75250 108 / 3e-32 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.002G035000 [exp] 102 / 8e-30 AT1G75250 122 / 5e-38 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.007G025200 [exp] 92 / 7e-26 AT4G39250 99 / 1e-28 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014301 pacid=23164721 polypeptide=Lus10014301 locus=Lus10014301.g ID=Lus10014301.BGIv1.0 annot-version=v1.0 ATGACTCAACCCAAACCTGCAGAACCAACTTCCATCTCCAAAATGGCATCAAATTCATTGACTACCTCCAGGAGTTACAGCACTTGGACCCCGAAACAGA ACAAGATGTTCGAGAAGGCTCTGGCTCTGTACGACAAGGACACCCCTGACCGCTGGCAGAATGTGGGTAGGGCTGTCGGTAAATCTGCCGATGAAGTCAA GTCCCACTACGAGCTCCTCATAAGCGATGTCAGGGAGATCGAGTCTGGCCGGGTTCCCTTCCCGAATTACAGGCACACTGGCACCACCAACTGA
AA sequence Show only first row Show all	>Lus10014301 pacid=23164721 polypeptide=Lus10014301 locus=Lus10014301.g ID=Lus10014301.BGIv1.0 annot-version=v1.0 MTQPKPAEPTSISKMASNSLTTSRSYSTWTPKQNKMFEKALALYDKDTPDRWQNVGRAVGKSADEVKSHYELLISDVREIESGRVPFPNYRHTGTTN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10014301 [exp]	0	1
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10029458 [exp]	3.5	0.8956
AT4G31370		FLA5	FASCICLIN-like arabinogalactan...		Lus10026223 [exp]	4.5	0.8644
AT5G01750			Protein of unknown function (D...		Lus10025254 [exp]	4.5	0.8904
AT3G25855			Copper transport protein famil...		Lus10021687 [exp]	6.9	0.8919
AT5G24620			Pathogenesis-related thaumatin...		Lus10015591 [exp]	8.3	0.8994
AT2G37390		NAKR2	SODIUM POTASSIUM ROOT DEFECTIV...		Lus10024435 [exp]	15.6	0.8644
AT5G03795			Exostosin family protein (.1)		Lus10016058 [exp]	16.3	0.8878
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10039864 [exp]	23.1	0.8818
AT2G18196			Heavy metal transport/detoxifi...		Lus10008284 [exp]	25.8	0.8783
AT3G50140			Plant protein of unknown funct...		Lus10037762 [exp]	26.7	0.8413

Compare expression of checked genes

Lus10014301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.