Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18350 144 / 2e-41 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) AT2G02540 133 / 8e-37 ZF_HD ATHB21, ZFHD4, ZHD3 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) AT3G50890 131 / 1e-36 ZF_HD ATHB28, ZHD7 ZINC FINGER HOMEODOMAIN 7, homeobox protein 28 (.1) AT1G14440 125 / 1e-33 ZF_HD ATHB31, ZHD4 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) AT1G69600 119 / 6e-32 ZF_HD ATHB29, ZFHD1, ZHD11 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) AT5G60480 116 / 1e-31 ZF_HD ATHB26, ZHD12 ZINC FINGER HOMEODOMAIN 12, homeobox protein 26 (.1) AT1G75240 87 / 2e-19 ZF_HD ATHB33, ZHD5 zinc-finger homeodomain 5, homeobox protein 33 (.1) AT3G28920 82 / 7e-18 ZF_HD ATHB34, ZHD9 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) AT4G24660 81 / 1e-17 ZF_HD ATHB22, MEE68, ZHD2 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) AT1G74660 75 / 5e-17 ZF_HD MIF1 mini zinc finger 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026010 [exp] 357 / 8e-125 AT1G75240 172 / 2e-52 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10031315 [exp] 103 / 2e-26 AT1G75240 137 / 9e-40 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10007147 [exp] 87 / 3e-19 AT2G18350 222 / 1e-70 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Lus10010694 [exp] 79 / 2e-16 AT2G02540 215 / 5e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10015900 [exp] 76 / 2e-16 AT4G24660 145 / 6e-44 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Lus10038135 [exp] 78 / 4e-16 AT2G02540 223 / 7e-71 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10005242 [exp] 77 / 8e-16 AT5G39760 218 / 9e-69 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) Lus10010693 [exp] 73 / 9e-16 AT2G02540 104 / 7e-28 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10036753 [exp] 74 / 3e-15 AT5G15210 112 / 3e-30 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G024100 [exp] 151 / 2e-43 AT1G75240 186 / 2e-56 zinc-finger homeodomain 5, homeobox protein 33 (.1) Potri.019G081300 [exp] 135 / 4e-38 AT4G24660 166 / 8e-51 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.013G108900 [exp] 127 / 5e-35 AT4G24660 171 / 2e-52 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.004G135100 [exp] 122 / 5e-33 AT2G02540 213 / 4e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Potri.004G126500 [exp] 115 / 5e-30 AT3G28920 218 / 5e-69 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.005G122500 [exp] 114 / 4e-29 AT2G18350 179 / 2e-54 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Potri.012G040900 [exp] 107 / 3e-28 AT4G24660 143 / 4e-43 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.003G000400 [exp] 105 / 2e-26 AT1G14440 238 / 9e-78 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.015G032700 [exp] 102 / 4e-26 AT1G69600 137 / 2e-40 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) Potri.004G229600 [exp] 100 / 2e-24 AT1G14440 244 / 1e-79 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04770 [flax] [poplar] ZF-HD_dimer ZF-HD protein dimerisation region
Representative CDS sequence Show only first row Show all	>Lus10014302 pacid=23164727 polypeptide=Lus10014302 locus=Lus10014302.g ID=Lus10014302.BGIv1.0 annot-version=v1.0 ATGTCATCCATCCTTGATCAGGTACAGTCGGGTCTTCCGATCCAATCCACGATGGATCAAGAGGGAGACACGAACAAAACGACGTCGCTCCTTGGCCACA CTACAGCTCACCAGCGGCAGCATTCATCATCCGGAGCGAGATCCAGAACTGATCGCAACCGTTCAATCGATCTGCCCCCTGACGACCATCGCTCACCGTT GGATCTCCAACCAAACGACCCTCATGAAGAGGATGATCGCAGATCCAGATTATTGCAGCCTGCCGCCTACCCTTCAACGGTGCAGCAGCAGCAGCCACTT ATTATTGTGAGATACAGAGAGTGTATGAAGAATCACGCCCCCTCATCGGGTAGACACGTCGTCGACGGATGCGGCGAGTTTATGCCCCGCTCCGACGACG GTGTCGACTTGAGATGCGCCGCTTGCGACTGCCACCGGAACTTCCACCGACACGAGATCGACAGCCCACCGCCGACGATGCTGCAGCCTGCTCCTAGGAG GACCACCGCTAGTACCATGCACAGATTCCCCCCTCCACCCCCTCCTCCGGTAATAATGATGAACTTTGGCGGAGGGAGTAGTATGGGAGCAGAATCTTCG AGCAAGGATCTAGAGAAATCGCGGGGGACGAGGGGATATGGGTTGTTATTGCAACGTTCGACGTCGTCGCATTCGAGGAAGAGACACAGGACCAAGTTTA GCAAGGAGCAGAAGCAGAGCATGTCGGATTTCGCGGAGAGGATAGGGTGGAGGATCGACAAAGGAGACGAATCAGAGGTTGACATGTTTTGTTCGCGGAT TGGGGTGAAAAGGAAAGTGTTCAAGGTCTGGATGCACAACAACAAGCAGCGGTCGGGGAAGGGAAACCAAAGCAAATGTAAGTGA
AA sequence Show only first row Show all	>Lus10014302 pacid=23164727 polypeptide=Lus10014302 locus=Lus10014302.g ID=Lus10014302.BGIv1.0 annot-version=v1.0 MSSILDQVQSGLPIQSTMDQEGDTNKTTSLLGHTTAHQRQHSSSGARSRTDRNRSIDLPPDDHRSPLDLQPNDPHEEDDRRSRLLQPAAYPSTVQQQQPL IIVRYRECMKNHAPSSGRHVVDGCGEFMPRSDDGVDLRCAACDCHRNFHRHEIDSPPPTMLQPAPRRTTASTMHRFPPPPPPPVIMMNFGGGSSMGAESS SKDLEKSRGTRGYGLLLQRSTSSHSRKRHRTKFSKEQKQSMSDFAERIGWRIDKGDESEVDMFCSRIGVKRKVFKVWMHNNKQRSGKGNQSKCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10014302 [exp]	0	1
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10001540 [exp]	5.7	0.9638
AT5G66440			unknown protein		Lus10025994 [exp]	8.2	0.9595
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Lus10026566 [exp]	11.2	0.9569
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10016809 [exp]	11.2	0.9561
AT2G27880		AGO5	ARGONAUTE 5, Argonaute family ...		Lus10014386 [exp]	11.5	0.9588
AT2G26520			unknown protein		Lus10021765 [exp]	13.2	0.9386
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10038002 [exp]	15.0	0.9575
AT2G40010			Ribosomal protein L10 family p...		Lus10028276 [exp]	16.7	0.9515
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10024603 [exp]	18.5	0.9532
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10027398 [exp]	18.5	0.9545

Compare expression of checked genes

Lus10014302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.