Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19880 498 / 6e-179 Glutathione S-transferase family protein (.1.2.3) AT5G45020 481 / 2e-172 Glutathione S-transferase family protein (.1.2) AT5G44990 450 / 5e-160 Glutathione S-transferase family protein (.1.2.3) AT5G44000 209 / 1e-64 Glutathione S-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038348 [exp] 524 / 0 AT4G19880 580 / 0.0 Glutathione S-transferase family protein (.1.2.3) Lus10036209 [exp] 523 / 0 AT4G19880 580 / 0.0 Glutathione S-transferase family protein (.1.2.3) Lus10027233 [exp] 218 / 6e-68 AT5G44000 508 / 2e-180 Glutathione S-transferase family protein (.1) Lus10005510 [exp] 153 / 1e-44 AT4G19880 162 / 3e-48 Glutathione S-transferase family protein (.1.2.3) Lus10026012 [exp] 0 / 1 AT5G45020 123 / 3e-39 Glutathione S-transferase family protein (.1.2) Lus10038943 [exp] 0 / 1 AT5G44000 186 / 1e-55 Glutathione S-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G121600 [exp] 515 / 0 AT4G19880 600 / 0.0 Glutathione S-transferase family protein (.1.2.3) Potri.014G192300 [exp] 202 / 7e-62 AT5G44000 493 / 2e-174 Glutathione S-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014304 pacid=23164743 polypeptide=Lus10014304 locus=Lus10014304.g ID=Lus10014304.BGIv1.0 annot-version=v1.0 ATGGCCAGTTCTACTCAGAATGAGCTCTCCAATTCTGGAACTGCTACGACCTTTCGAAACTTCATAACCCAGGACCCCAACTCCCAGTTTCCACCAGAAT CTGGGAGGTATCATCTCTATGTATCGTATGCCTGTCCATGGGCGTCTAGATGTCTTGCGTACTTGAGCATCACGGGACTCATTAACCACATTAGCTTCAC GTCTGTGAAGCCCTTATGGGGCAGGACCAAGGACAGTGTTGATGAACATATGGGATGGGTTTTCCCCAACTCGGAGACAGATGAACCAGGATCAGAACCT GACCCTTTGAATGGAGCCAAAAGCATTAGGGATTTGTACGATCTAGCAAGCACAAATTACACCGGGAAGTATACAGTTCCAGTGCTGTGGGATAAAAAGC TCAGCACAATCGTCAACAATGAGAGTGCTGAGATCATTCGCATGCTCAATGCAGGATTCAACGACATAGTAACATTGGACCTGTACCCTCCTCACTTACG AGATCGAATTGACGAAACTAATTCTTGGATAGATAGCGGGATAAACAGTGGTGTATACAAATGTGGGTTTGCCAGGAAGCAAAGTCAATACGAGGAGGCA ATAAGAGACTTGTATGAATCCTTGGACAACTGTGAGGCGATACTCAATAAGCAACGATACATTTGTGGGGACAAATTGACTGAAGCAGACATCCGGCTGT TTGTTACACTAATCAGATTCGATGAGGTATATGCAGTTAACTTCAAGTGCAGCAAGAAGCTGTTGAGGGAGTACCCAAACCTCTTCAATTACACAAAGGA CGTTTACCAAATCCCTGGGATGAGCTCAACTGTGAACATGGCTCACATAAAGCTGTTCTATTACGGGAGCCACCCTTCCATGAATCCTTCTGGTATCATC CCTGTTGGTCCAGATGTCGATTACGCCGCCCCGCACGACAGGGCACGGTTCTAG
AA sequence Show only first row Show all	>Lus10014304 pacid=23164743 polypeptide=Lus10014304 locus=Lus10014304.g ID=Lus10014304.BGIv1.0 annot-version=v1.0 MASSTQNELSNSGTATTFRNFITQDPNSQFPPESGRYHLYVSYACPWASRCLAYLSITGLINHISFTSVKPLWGRTKDSVDEHMGWVFPNSETDEPGSEP DPLNGAKSIRDLYDLASTNYTGKYTVPVLWDKKLSTIVNNESAEIIRMLNAGFNDIVTLDLYPPHLRDRIDETNSWIDSGINSGVYKCGFARKQSQYEEA IRDLYESLDNCEAILNKQRYICGDKLTEADIRLFVTLIRFDEVYAVNFKCSKKLLREYPNLFNYTKDVYQIPGMSSTVNMAHIKLFYYGSHPSMNPSGII PVGPDVDYAAPHDRARF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19880			Glutathione S-transferase fami...		Lus10014304 [exp]	0	1
AT2G18620			Terpenoid synthases superfamil...		Lus10009136 [exp]	2.4	0.9891
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10005858 [exp]	2.4	0.9922
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013593 [exp]	3.2	0.9887
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10028759 [exp]	3.5	0.9888
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10022047 [exp]	3.5	0.9907
AT1G16120		WAKL1	wall associated kinase-like 1 ...		Lus10008105 [exp]	4.0	0.9862
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10009988 [exp]	4.5	0.9841
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10007972 [exp]	7.9	0.9848
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10015049 [exp]	8.1	0.9833
					Lus10002336 [exp]	8.9	0.9819

Compare expression of checked genes

Lus10014304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.