Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63810 1274 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026014 [exp] 2040 / 0 AT1G63810 1313 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G024600 [exp] 1459 / 0 AT1G63810 1399 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF03813 [flax] [poplar] Nrap Nrap protein domain 1
Representative CDS sequence Show only first row Show all	>Lus10014305 pacid=23164688 polypeptide=Lus10014305 locus=Lus10014305.g ID=Lus10014305.BGIv1.0 annot-version=v1.0 ATGGCGACGGTAACGCTGCCGGATCCAATGAGCCTGAAGATCTCTGAGCTCTTAAAGGAAGTTCATCTCCAGAACTCGTCTTCCTTCACCAAGCTCGTTG AAGACACCGTTTCCGCCATCAGAGAATCAATCAACCAAATGCCGGAGGACTTCACGGTTACTGCGAAGGAAGCTCGAGGATTCGTTCGAGATATTGGCGC TGACAAGGCCGAGTTTAAGTTTAAGAGGCCGAGTCATCTGGAAGTCGGCGGAAGTTATTCGATAAATTGTATAGCGAGACCTGAAACTAATGTGGACCTT CTCTTGCGGCTTCCAAAGGATTGCTTCAATGAGAAAGATTACTTAAATCACAGGTATCATGCCAAGCGGTTCCTTTACCTTTGTATCATTAAGAAGTTCT TGAAGTCTTCTTCATCAATTTCCAAGGTTGTTTGGTCCACCTTCCAGAATGAGGCTCGAAAACCTGTACTTGTGGTCTATCCAGCCGCCAACACCCCAGA ATTTCCTGGGTTCTTTGTACGGATAATTCCTACTGCGAAGTCTTTGTTCAATGTTTCGAAGTTGGCCTTAAGAAGGAATAACATCAGAGCTCTTCAAGAT GGGAACACTCCTCTACCTTCTCCAAAGTATAATAGCAGTATTTTGGAGGATATGAGTTTGGAAGAGAACAATGAATTTCTCCGAGACACTTTCGCTGGGT GGAATGAACTGGGAGAAACTCTGATTCTGCTGAAGGTGTGGGCTCGACATAGAAGTTCTGTGTACGTTCATGATGGAGTAAATGGATTCCTGCTAGCTAT TATACTGTCCTACCTAGCAACCCATGCGAAGGTTAATAAATCTATGAGGCCACTGCACATGTTTCGTGTTACATTGGATTTCATAGGTAATTCAAACCTA TGGAGCAAAGGGCTCTATTTTCGAAAGCATTGTGATATTAAGTTATCAAAGGAGGACAGGATGATTTACAGAGAGTCGTTCCCTGTTGTTCTATGTGATC CACGAATCCCTGTCAATTTAACTTACCGGATAAGCAGAATTGCTTTCTCCGAGCTTCTCGAAGAAGCGGCACTTACTCTTCAATGCTTAGGAAAAGGCGG AGATGGGGCATTTGAGGATATCTTTACCACCAATGTTGATTTTCCTTCTAGATATGATCATTGCATAAGGTTGAATTTAAAGGGGAACTGTGAAGTATTT TCTTCTGGGTTTTGTCTGGACAATGAATGTTGGAGATTGTATGAGCAAAAGGTGCATGATATTCTCAGTCAGGGTTTGGGAGAGAGGGCAAAGTCTATTC GTGTTATTTGGAGAAATATCTCTTCTGGATGCAGATTGGAGAAGGGTTTGTCTACTCTCGACCGAGAACCATTGATTATAGGAGTTTCTGTTAGCTCATT GGAGGAAGCATTCGGAGTTGTTGATATTGGCCCGAATGCTGAAGACAAGGATGCGGCTCTTAAATTCCGTAAGTTCTGGGGTGAAAAAGCAGAGCTTCGA AGGTTCAAAGATGGTAGAATTGCTGAAAGTACTGTTTGGGAAACAAAGCAGTGTACAAAGCATCTCATTCTTAAAAGAATAGTCGAACATCTGCTTGTTC GACATCTTTCTATATCGGCAATAAATATTACCCAAATTGTAGATCAGCTAGATTTTTCTTTGCTTCATGGTGCTGCAGATCCGATATCATTATTCCCGGA TTTGTGTGGGGCGTTTGATGTTCTGGAAAAGCGACTTCGTTTGATTGAAGACATTCCTTTGAAGATATCACATGTGCAATCTTTAGACCCAGCTTTGAGA GCCACTTCTGTCTTTCCTCCTGAGCCACATCCACTCGCTATTGAGAAGGGAACCGCTGGAAAATTGAGTAAACGTACTCCATCATGCATTCAGCCCCTTG AAGTGATGATTCAGTTGGAAGGTTCAGCAAATTGGCCAAGGGATGAAATTGCAATTGAGAAAACCAAATCTGCCTTCCTTCTTAAAATTGGGGAAAGCTT GCAAAGTAACTGGAAGATGGCGTGCAACGCGACCGAAAATGATATGGTGGTTTTTCTTAATGGATATGCATTCCGCCTCAATATTTTGCATGACAGAGCC CTAACCTTGGTCAATAGTGGAAGTGGAAGTCAACGAGCCAAGCTAGTGTTTAGTACAGACAAGAGACTGTTTCTTCAAAGTCAGCATTCAAGTACAATTA ACGCCTTACAGCGTGCTCATCCAGCTTATGGCCCAGTTGTTAGGCTTGCAAAGAGATGGGTTGCTGCACATTTATTTTCAGCTTGCTTGACAGATGAGGC AGTAGAATTATTGGTGGCACATCTTTTTGTAACTCCCTTACCCTTTAAAGCACCTTGTTCTCGCCTCACTGGGCTCTTAAGGTTCTTGCGATTACTAGCA GAGTATGACTGGAGCTTTTCTGCATTGGTTGTTGACATAAACAATGACTTGAGCCCAAGTGACAAGGAGGAGATTGAAAAAAACTTTTCATCGAGTAGAA AGGGTTACGAGGGAAACATGCAAAATGTCAGTCCAGCGATGTTTTTAGCCACGCCATATGATAAAGCATCTGAAGCGTGGACTGCGTTTCCAAGTTCAGT GGAGCTGAAGAGACTTGTAGCTTATGCTCGTAGCAGCGCAGCTTTGCTGACCAGACTCGTTTTACAAGATGAAACTGATTCATTAAGATGGGAGTGCCTT CTTCGAACCCCTTTCAACAACTACGATGCAGTAGTTCTTCTTCATGCCGATAAGTTACCATTCCCTCGCCACCTCCTCTTCCCATCAGCAGTGAATCATG GGAGGATCGTTGCTCGTGGCAATGCTACTAAATCTTTTGGGCCGTTCTTTACTGCTGAAGATTTCAAAGGGAACTTACAGCAACTGAAAGATAAGCTACT GATTGACTTCGATCCGTTACAATGCTACGTTACTGATCTAAAGGCAAGCAGCAGCATTTCAAGTTTGGGCTTTAACCTTTTTAACAAACTTCTCGAGTTC AGTACCGTCAAGTTGTGGTATGATGCTCTAGGTGGGGACACCATTGGACTAACATGGGAAAGATCTGGATCAAAGAAACGTTTACGGGATGATAAGAATG ACGAGGAAGAAGGAGATGATCCGGTTAATATACTGAAGGCAGTTGGTGAAGCTGGTAAAGGGTTCGTGAAAAGCGTACATCTAGTCAAAGTTCCAAGGGT CACAGCTTAG
AA sequence Show only first row Show all	>Lus10014305 pacid=23164688 polypeptide=Lus10014305 locus=Lus10014305.g ID=Lus10014305.BGIv1.0 annot-version=v1.0 MATVTLPDPMSLKISELLKEVHLQNSSSFTKLVEDTVSAIRESINQMPEDFTVTAKEARGFVRDIGADKAEFKFKRPSHLEVGGSYSINCIARPETNVDL LLRLPKDCFNEKDYLNHRYHAKRFLYLCIIKKFLKSSSSISKVVWSTFQNEARKPVLVVYPAANTPEFPGFFVRIIPTAKSLFNVSKLALRRNNIRALQD GNTPLPSPKYNSSILEDMSLEENNEFLRDTFAGWNELGETLILLKVWARHRSSVYVHDGVNGFLLAIILSYLATHAKVNKSMRPLHMFRVTLDFIGNSNL WSKGLYFRKHCDIKLSKEDRMIYRESFPVVLCDPRIPVNLTYRISRIAFSELLEEAALTLQCLGKGGDGAFEDIFTTNVDFPSRYDHCIRLNLKGNCEVF SSGFCLDNECWRLYEQKVHDILSQGLGERAKSIRVIWRNISSGCRLEKGLSTLDREPLIIGVSVSSLEEAFGVVDIGPNAEDKDAALKFRKFWGEKAELR RFKDGRIAESTVWETKQCTKHLILKRIVEHLLVRHLSISAINITQIVDQLDFSLLHGAADPISLFPDLCGAFDVLEKRLRLIEDIPLKISHVQSLDPALR ATSVFPPEPHPLAIEKGTAGKLSKRTPSCIQPLEVMIQLEGSANWPRDEIAIEKTKSAFLLKIGESLQSNWKMACNATENDMVVFLNGYAFRLNILHDRA LTLVNSGSGSQRAKLVFSTDKRLFLQSQHSSTINALQRAHPAYGPVVRLAKRWVAAHLFSACLTDEAVELLVAHLFVTPLPFKAPCSRLTGLLRFLRLLA EYDWSFSALVVDINNDLSPSDKEEIEKNFSSSRKGYEGNMQNVSPAMFLATPYDKASEAWTAFPSSVELKRLVAYARSSAALLTRLVLQDETDSLRWECL LRTPFNNYDAVVLLHADKLPFPRHLLFPSAVNHGRIVARGNATKSFGPFFTAEDFKGNLQQLKDKLLIDFDPLQCYVTDLKASSSISSLGFNLFNKLLEF STVKLWYDALGGDTIGLTWERSGSKKRLRDDKNDEEEGDDPVNILKAVGEAGKGFVKSVHLVKVPRVTA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63810			unknown protein		Lus10014305 [exp]	0	1
					Lus10027376 [exp]	4.7	0.9760
AT1G21080			DNAJ heat shock N-terminal dom...		Lus10013198 [exp]	5.8	0.9599
AT1G47670			Transmembrane amino acid trans...		Lus10003338 [exp]	6.6	0.9763
AT1G18900			Pentatricopeptide repeat (PPR)...		Lus10033110 [exp]	9.0	0.9609
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10004612 [exp]	12.3	0.9686
AT2G48020			Major facilitator superfamily ...		Lus10008184 [exp]	15.1	0.9655
AT1G66160		ATCMPG1	"CYS, MET, PRO, and GLY protei...		Lus10040124 [exp]	18.7	0.9728
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10021028 [exp]	20.0	0.9636
					Lus10040444 [exp]	24.0	0.9614
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10027614 [exp]	24.7	0.9658

Compare expression of checked genes

Lus10014305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.