Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39250 82 / 7e-22 MYB RSM2, ATRL1 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) AT2G21650 79 / 6e-21 MYB RSM1, ATRL2, MEE3 RADIALIS-LIKE SANT/MYB 1, MATERNAL EFFECT EMBRYO ARREST 3, ARABIDOPSIS RAD-LIKE 2, Homeodomain-like superfamily protein (.1) AT1G75250 73 / 1e-18 MYB RSM3, ATRL6 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) AT1G19510 70 / 2e-17 MYB RSM4, ATRL5 RADIALIS-LIKE SANT/MYB 4, RAD-like 5 (.1) AT2G18328 62 / 3e-14 MYB ATRL4 RAD-like 4 (.1) AT5G58900 61 / 9e-13 MYB Homeodomain-like transcriptional regulator (.1) AT4G36570 57 / 9e-13 MYB ATRL3 RAD-like 3 (.1) AT2G38090 57 / 5e-11 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT5G05790 53 / 1e-09 MYB Duplicated homeodomain-like superfamily protein (.1) AT3G11280 52 / 2e-09 MYB Duplicated homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024009 [exp] 111 / 7e-33 AT1G75250 82 / 6e-21 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10023568 [exp] 87 / 4e-24 AT4G39250 123 / 5e-38 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Lus10040450 [exp] 86 / 1e-23 AT1G75250 98 / 5e-28 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10040453 [exp] 86 / 2e-23 AT2G21650 115 / 4e-35 RADIALIS-LIKE SANT/MYB 1, MATERNAL EFFECT EMBRYO ARREST 3, ARABIDOPSIS RAD-LIKE 2, Homeodomain-like superfamily protein (.1) Lus10023564 [exp] 82 / 4e-22 AT1G75250 101 / 2e-29 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10010831 [exp] 82 / 6e-22 AT1G75250 108 / 6e-32 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10033212 [exp] 82 / 2e-21 AT1G75250 107 / 2e-31 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10041752 [exp] 77 / 3e-20 AT1G75250 103 / 2e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10028306 [exp] 75 / 3e-19 AT1G75250 103 / 1e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G035000 [exp] 82 / 6e-22 AT1G75250 122 / 5e-38 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.007G025100 [exp] 80 / 3e-21 AT1G75250 91 / 1e-25 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.009G117200 [exp] 79 / 5e-21 AT4G39250 109 / 1e-32 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.007G023800 [exp] 79 / 6e-21 AT1G75250 116 / 2e-35 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.004G155400 [exp] 79 / 7e-21 AT1G75250 124 / 4e-38 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.005G122200 [exp] 79 / 7e-21 AT4G39250 112 / 3e-34 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.007G025200 [exp] 79 / 8e-21 AT4G39250 99 / 1e-28 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.004G155866 [exp] 78 / 2e-20 AT1G75250 113 / 5e-34 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.005G228000 [exp] 75 / 2e-19 AT1G75250 115 / 5e-35 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.009G116600 [exp] 75 / 2e-19 AT4G39250 120 / 4e-37 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014307 pacid=23164761 polypeptide=Lus10014307 locus=Lus10014307.g ID=Lus10014307.BGIv1.0 annot-version=v1.0 ATGCCGACGTGGACGGCGAAGATGAACAAGCTGTTCGAGGTCGCGCTGGCAATGTACGACGACGACACGCCGGATAGATGGGAGGTTATAGCCGACATCG TCGGCGGAGGTACTACTCCCGAGGAAGTCAAGACCCGGTACGACATACTTGTCGATGACGTGGAGCGGATAGAGATGGACGATGGGCCGTTCCCTGTTTA CGAGGATGACGATGAGGAGGATTCTTCCTCCTCCTCCGACGGAATATCAGATTAG
AA sequence Show only first row Show all	>Lus10014307 pacid=23164761 polypeptide=Lus10014307 locus=Lus10014307.g ID=Lus10014307.BGIv1.0 annot-version=v1.0 MPTWTAKMNKLFEVALAMYDDDTPDRWEVIADIVGGGTTPEEVKTRYDILVDDVERIEMDDGPFPVYEDDDEEDSSSSSDGISD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10014307 [exp]	0	1
					Lus10022637 [exp]	1.4	0.8037
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031579 [exp]	6.0	0.7951
AT5G10695			unknown protein		Lus10042440 [exp]	8.7	0.7909
AT5G19890			Peroxidase superfamily protein...		Lus10026748 [exp]	14.8	0.8043
AT2G35615			Eukaryotic aspartyl protease f...		Lus10035668 [exp]	15.6	0.7354
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10016180 [exp]	18.2	0.7615
					Lus10005955 [exp]	19.6	0.7663
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10007159 [exp]	25.5	0.6937
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	25.9	0.7785
AT3G62890			Pentatricopeptide repeat (PPR)...		Lus10033544 [exp]	28.9	0.7834

Compare expression of checked genes

Lus10014307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.