Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49555 810 / 0 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT1G06820 71 / 2e-12 CCR2, CRTISO CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) AT1G57770 57 / 2e-08 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G16310 44 / 0.0005 LDL3 LSD1-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041743 [exp] 798 / 0 AT5G49555 933 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10026016 [exp] 586 / 0 AT5G49555 494 / 2e-171 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10024010 [exp] 524 / 0 AT5G49555 607 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10029347 [exp] 67 / 3e-11 AT1G06820 913 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Lus10016199 [exp] 64 / 1e-10 AT1G06820 912 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Lus10037348 [exp] 55 / 1e-07 AT1G57770 900 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G025300 [exp] 807 / 0 AT5G49555 943 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.006G199600 [exp] 66 / 4e-11 AT1G06820 877 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Potri.016G066000 [exp] 66 / 6e-11 AT1G06820 903 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Potri.003G005800 [exp] 60 / 3e-09 AT1G57770 869 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01266 [flax] [poplar] DAO FAD dependent oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10014308 pacid=23164765 polypeptide=Lus10014308 locus=Lus10014308.g ID=Lus10014308.BGIv1.0 annot-version=v1.0 ATGTGGAAGAAATGCTTAACAACAGCGTCGTCCTCGTCGTCGTCCACATCATTTCGGACTCTCAAGGAGAAGAAATGGGACGCGGTAGTGATTGGCGGCG GGCACAACGGCTTAACTGCAGCCGCCTACCTCGCCCGAGGTGGTCTCTCCGTTGCCGTACTTGAGCGCCGCCACTTGGTGGGCGGCGCCGCCGTTACGGA AGAGATTATTCCTGGCTTCAAGTTCTCCCGTTGCAGCTACCTCCAAAGTCTCCTTCGCCCCGCCGTCATCAAAGAGCTGGAACTGGAGAGGCATGGATTG AAGATGTTGAAAGGAAGTTCATTCTCCTTCACGCCTTGCGTCGACGGCCGATACCTTCTGCTGGGAGCCGATGAACACCAAGACCTCGCTGAGATTTCGA AATTCTCGAAACGAGATGCAGAGGCTTATCCCAGATACGAGAAGCAGCTGGAACAATTCTGCAAATTCTTGGATCCACTTTTGGATTCAATCCCGCCGGA GTCCTTGCATAGGGCATCGTCTCTGAGTGGTCGGCTCAAGGACCGGAAGCAGAGATTAGATTTCTGGATTCCTTTCATCCGAAGAGCTCTCTCCTTGGGC CAGAAAGATTTGGTGGACTTCGCGGAGCTGCTGGTATCTCCGGCTTCCAAGGTTTTGCATAAGTGGTTCGAGACAGACATTCTGAAGGCATCACTTGGAA TGGATTCTATCATAGGCAGCACGGGGAGCCCTGGTACGCCAGGGAGTGGATATGTGTTGCTACACCACGTGATGGGAGATTCAGATGGGGATCGTAATGT TTGGTCGCACGTGGAAGGTGGGATGGGCTCGATATCGTCTTCTATTCGGAGTGCTGCTGTGGAAGCTGGTGCCCAAGTCTTCACAAATGCAGAGGTTTCA GAAATATTAGTGAATGATTCCGGAGCTGCTAGCGGGGTACTATTGACTGATGGTACGAAAGTTGTCTCTCGTGTCGTTCTGTCAAACGCCACCCCTTACA AGACTTTCCTGGAAATGTTGCCTGGTGATGTTCTGCCTGCTGATTTCACCACTTCTTTGAAGAACACAGACTATAGTTCTGCGACCACGAAGATAAACGT AGCGTTGGACAAGCTGCCCCAGTTTTCGTGTCGTAAGAGTGGTGGTTCTGATGCTGTAGGTACACACCACATGGGGACGACTCGTATCGGTGCAGATAGT CTGGAGGCGATTGAGAAGGCATGTCAAGATGCCGAAAATGGTTTACCATCACAAAGGCCAGCTATGGAGATGACAATTCCTTCTGTTCTGGACACAACTA TTTCTCCCCCTGGTAAACATGTGGTTGGGTTGTTCACTCAGTACACACCTTATAAGCCGTCTGATGGAAGCTGGGATGATCCCACTTACCGAGAAAAGTA TGCACAAAGATGTTTTAGCCTGATTGACGAGTACGCACCAGGATTCAGCTCGTCGGTCATTGGGTACGACATGTTGACTCCACCTGATCTGGAGCGCGAA ATCGGACTCACAGGGGGGAACATCTTCCACGGTGCCATGGGATTGGACTCGCTCTTCCTCATGCGACCAGTAAAAGGATGGTCGGATTATAAGACGCCAA TACGAGGACTGTACTTGTGCGGAAGCGGGGCTCATCCAGGTGGGGGTGTAATGGGTGCTCCTGGCCGTAATTCAGCATCTGTTGTTCTTCAGGATTTCAA CAAATCACCCTGA
AA sequence Show only first row Show all	>Lus10014308 pacid=23164765 polypeptide=Lus10014308 locus=Lus10014308.g ID=Lus10014308.BGIv1.0 annot-version=v1.0 MWKKCLTTASSSSSSTSFRTLKEKKWDAVVIGGGHNGLTAAAYLARGGLSVAVLERRHLVGGAAVTEEIIPGFKFSRCSYLQSLLRPAVIKELELERHGL KMLKGSSFSFTPCVDGRYLLLGADEHQDLAEISKFSKRDAEAYPRYEKQLEQFCKFLDPLLDSIPPESLHRASSLSGRLKDRKQRLDFWIPFIRRALSLG QKDLVDFAELLVSPASKVLHKWFETDILKASLGMDSIIGSTGSPGTPGSGYVLLHHVMGDSDGDRNVWSHVEGGMGSISSSIRSAAVEAGAQVFTNAEVS EILVNDSGAASGVLLTDGTKVVSRVVLSNATPYKTFLEMLPGDVLPADFTTSLKNTDYSSATTKINVALDKLPQFSCRKSGGSDAVGTHHMGTTRIGADS LEAIEKACQDAENGLPSQRPAMEMTIPSVLDTTISPPGKHVVGLFTQYTPYKPSDGSWDDPTYREKYAQRCFSLIDEYAPGFSSSVIGYDMLTPPDLERE IGLTGGNIFHGAMGLDSLFLMRPVKGWSDYKTPIRGLYLCGSGAHPGGGVMGAPGRNSASVVLQDFNKSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10014308 [exp]	0	1
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10042065 [exp]	2.8	0.9382
AT5G08570			Pyruvate kinase family protein...		Lus10041003 [exp]	7.3	0.9314
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10028627 [exp]	8.7	0.9068
AT4G10265			Wound-responsive family protei...		Lus10039751 [exp]	15.6	0.9106
AT2G25970			KH domain-containing protein (...		Lus10013531 [exp]	18.4	0.8916
AT4G10265			Wound-responsive family protei...		Lus10039755 [exp]	18.8	0.9040
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10006412 [exp]	18.8	0.9024
AT5G67320		HOS15	high expression of osmotically...		Lus10010384 [exp]	18.9	0.8855
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10012736 [exp]	20.5	0.8472
AT2G37510			RNA-binding (RRM/RBD/RNP motif...		Lus10003980 [exp]	20.6	0.8651

Compare expression of checked genes

Lus10014308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.