Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49560 232 / 1e-75 Putative methyltransferase family protein (.1) AT3G50850 189 / 4e-59 Putative methyltransferase family protein (.1) AT1G08125 43 / 0.0002 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026017 [exp] 228 / 2e-76 AT5G49560 147 / 3e-45 Putative methyltransferase family protein (.1) Lus10021425 [exp] 45 / 2e-05 AT1G08125 385 / 2e-135 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10016141 [exp] 42 / 0.0002 AT1G08125 183 / 7e-56 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G025600 [exp] 236 / 3e-77 AT5G49560 289 / 2e-98 Putative methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10294 [flax] [poplar] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10014309 pacid=23164764 polypeptide=Lus10014309 locus=Lus10014309.g ID=Lus10014309.BGIv1.0 annot-version=v1.0 ATGGCCAACCTCACTCCGCCGCCACAGGACGACGAACAAGACGACATTGAAGAGCTAGACCCAACCAAGATCCTTCTTCCGCCAGCTGATGAAGAAGCAG ATGAATTAGAAACTGAATTGACTCCACAGGATGGCGACTCCGGCAAGCTAGAAATCGAGCAGCATTACCTCCATTCTGTAAAGTCAACGTTGCAAATCCG TCAGCTTCCGTCCCAAGGTCTTTCCTTCAAGCTATGGCCGGCTGCCACAACATTCGTCAATCTCCTCGACCTCCACGTAAGCGACCCAACCAAAAGCCCC CTCTCTTCTACCCTCGCGGCCGCCGTTAAGAACGGCGGTAAGCTCAAAATCCTGGAGATTGGTTCCGGTACGGGTCTCGTCGGGATAGCAGCTGCAGCGG CGCTTGGCGCGGAAGTTACCGTCACCGACCTCCCTCACGTAGCGCCTAACCTCCAATTCAACGCGGAGCTAAACGACGACGTTGTGAGTGGCGGGGGTGG ATCCGTCCACGTGGCCCCGCTGAGGTGGGGGGAGGAGGAGGACGTGGATCGCGTGGGTCGAGGGTACTTCGACTTGGTGGTTGCGTCTGACGTGGTTTAT CACGACCACCTGTACGATCCTCTCCTCAAAACGCTGCGTTTCTTGCTCCTGCAGGGAGAAGGAAGGAAGACGGCGTTTGTGATGGCGCATTTGAGGAGGT GGAAAAAGGAAGCCACGTTCTTCAAGAGGGCTAGGAAATCGTTTGATGTTGAAGTTCTGTACGTCGACAGTCCTACCGACGGCCGGAGGCTCGGCGTTAC AGTTTACCGTTTTGTTGCCAAAGAGAAGAAAATGGCTGCAACTGCTGCACAAGCTTGA
AA sequence Show only first row Show all	>Lus10014309 pacid=23164764 polypeptide=Lus10014309 locus=Lus10014309.g ID=Lus10014309.BGIv1.0 annot-version=v1.0 MANLTPPPQDDEQDDIEELDPTKILLPPADEEADELETELTPQDGDSGKLEIEQHYLHSVKSTLQIRQLPSQGLSFKLWPAATTFVNLLDLHVSDPTKSP LSSTLAAAVKNGGKLKILEIGSGTGLVGIAAAAALGAEVTVTDLPHVAPNLQFNAELNDDVVSGGGGSVHVAPLRWGEEEDVDRVGRGYFDLVVASDVVY HDHLYDPLLKTLRFLLLQGEGRKTAFVMAHLRRWKKEATFFKRARKSFDVEVLYVDSPTDGRRLGVTVYRFVAKEKKMAATAAQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49560			Putative methyltransferase fam...		Lus10014309 [exp]	0	1
AT4G37190			unknown protein		Lus10001001 [exp]	5.5	0.8880
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10021402 [exp]	7.1	0.9118
AT5G42960			unknown protein		Lus10007162 [exp]	13.8	0.9055
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10031212 [exp]	16.1	0.9049
AT5G39550		ORTH1, VIM3	VARIANT IN METHYLATION 3, ORTH...		Lus10039127 [exp]	17.0	0.9010
AT4G00360		ATT1, CYP86A2	"cytochrome P450, family 86, s...		Lus10014768 [exp]	21.0	0.8645
AT5G35910			Polynucleotidyl transferase, r...		Lus10005691 [exp]	30.7	0.8956
AT1G09690			Translation protein SH3-like f...		Lus10029302 [exp]	36.4	0.8933
AT1G77030			hydrolases, acting on acid anh...		Lus10028644 [exp]	37.9	0.8938
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10017368 [exp]	38.5	0.8948

Compare expression of checked genes

Lus10014309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.