Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36630 1209 / 0 EMB2754 EMBRYO DEFECTIVE 2754, Vacuolar sorting protein 39 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026018 [exp] 1691 / 0 AT4G36630 1347 / 0.0 EMBRYO DEFECTIVE 2754, Vacuolar sorting protein 39 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G123000 [exp] 1353 / 0 AT4G36630 1382 / 0.0 EMBRYO DEFECTIVE 2754, Vacuolar sorting protein 39 (.1) Potri.007G025700 [exp] 1326 / 0 AT4G36630 1380 / 0.0 EMBRYO DEFECTIVE 2754, Vacuolar sorting protein 39 (.1) Potri.003G148700 [exp] 47 / 8e-05 AT1G22860 1144 / 0.0 Vacuolar sorting protein 39 (.1) Potri.001G081900 [exp] 45 / 0.0004 AT1G22860 1120 / 0.0 Vacuolar sorting protein 39 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10367 [flax] [poplar] Vps39_2 Vacuolar sorting protein 39 domain 2 CL0020 [flax] [poplar] TPR PF10366 [flax] [poplar] Vps39_1 Vacuolar sorting protein 39 domain 1 CL0020 [flax] [poplar] PF00780 [flax] [poplar] CNH CNH domain CL0020 [flax] [poplar] TPR PF00637 [flax] [poplar] Clathrin Region in Clathrin and VPS
Representative CDS sequence Show only first row Show all	>Lus10014310 pacid=23164759 polypeptide=Lus10014310 locus=Lus10014310.g ID=Lus10014310.BGIv1.0 annot-version=v1.0 ATGGTACACACTGCATATGATTCCTTCGAGCTACTCCGCGGCTGTCCAACGAAAATCGATGCCGTCGCATCATATGCTTCAAAGCTCCTCCTCGCCTGTT CCGATGGAGCTCTGCGAGTCTACGCCGCGGAATCCGACCGATCTCCGTCGACGGATTACCTGGGCCAAGCTCAAGAGCTTCGTAAGGAGGCATATGTCCT TGAGAGGACAGTCACCGGTTTTTCCAAGAAGAACCTCTTGTCTATGGAGGTATTGGCGTCTCGAGAGCTGCTTGTCTCGCTTTCCGAGTCGATCGCATTC CACAGGCTCCCTAATTTGGAGACTTTTGCAGTGATCACCAAGGCCAAAGGTGCCAACGTTTACTCTTGGGATGATAGAAGAGGATATCTATGCTTCGCGA GGCAAAAACGAGTCTACATAATCCGCCACGACGGACGAGGATTCGTGGAGGTGAAAGAATTTGGGGTTCCTGATACGGTGAAATCAATGTCCTGGTGTGG CGAAAACGTATGTATTGGGATTAAGAAGGAGTACGTGATACTGAACGCCACCAGCGGTGCATTGAGTGAGGTGTTTCCTTCTGGTCGACTTGCTCCACCT CTGGTTGTCTCTCTTCCCTCCGGGGAACTTCTGCTTGGAAAGATACGATCTCTTCGAGTTCCATATCCAATGATTCAGACCATTGTTCTTCAGAATGTTC GTCGTCTCGTTCAGAGCAATAATGCTGTTATTGTTGCATTGGACAATTCTGTTCATGGGCTCTTCCCTGTTCCTGTTGGTGCACAGATCGTGCAATTAAC CGCATCTGGAAATTTTGAAGAAGCTTTGGCATTGTGCAAGCTACTTCCTCCAGAAGATGCAAGCCTTCGTGCTGCAAAGGAGGGATCTATTCACATAAGA TATGCTCATCATCTTTTCGAAAATGGTAGTTACGAGGAGGCCATGGAGCACTTTTTAGCTTCACAAGTGGAAATCACATATGTACTTTCTATGTATCCAT CAATAATTCTTCCCAAAACAACTTTGATTTTGGAATCGGACAAGCTAGTCGACAGTTCTCCAGATGCTGTACAGTTATCAAGAGGTTCTTCTGGTGCATC AGATGATCTTGATCTCTCATCCGCATCACATTTAGCGGAATTTGATGAGCATTCAGCATTAGAATCCAAGAAGATGATCCATAATACTCTAATGGCTCTC GTTAAGTACTTACAGAAACGGAGATACAGCATCATCGAAAAAGCAACTGCTGAAGGAACAGAGGAGGTTGTTTTAGGTGCCGTCGGGGATAATTATGGAC ATTATGACTCCAGTAGGGGACGTGGTAATGTTGCCGTTAACTCAGGTGCTAGGGAAATGGCAGTAATTCTGGATACAGCCCTCCTCCAAGCACTTCTCCT TACTGGACAGTCCTCAGCTTCTCTAGAATTACTTAGAGGTCACAATTATTGCGATCTGAAAATTTGCGAGGAGAGTCTTCAGAAAAGGAATCATTTTTCT GCTTTGCTCGAGCTCTATAGGAGCAATTCAATGCACCGTGAAGCTCTAAAACTTTTGCATCATTTAGTTGAAGAATCAAGCTCGGGCCAATCTAAGATTA TTCATAAGTTCAAGCCTGAGGATATTATAGAGTATCTGAAGCTTCTTTGTGGAACCGATCCAATGCTTGTTCTGGAGTCCTCAATGCTCATTCTTGAAAG GTGTCCAACACAAACTATCGAGTTGTTTCTATCCGGGAACATACCTGCTGATCTGGTCAACTCTTATTTGAAGCAGCATGCTCCAAACATGCAGGGAAGA TATCTAGAACTTATGCTAGCAATGAATGAGAGTGCCATATCTGGAAACCTACAAAATGAAATGTTACAAATCTATCTTTCTGATGTTCTTGATTTGTATG CGGAATTGAGTGGCCAACAAAAATGGGACGAGAAGGCTTATTCCCCAGCAAGGAAAAAGTTATTATCTGCTCTAGAAGGTATCTCAGGATATAACCCTGA GACTTTGTTGAAGCGTCTTCCTCCTGATGCATTGTGTGAAGAACGTGCAATTTTATTAGGGAAGATGAACCAGCATGAACTTGCCCTGTCTCTCTATGTC CATAAGCTTCATCTGCCTGATCTGGCATTATCCTACTGCGATCGTGTATACGAGTCTGCAAATCCAACCAAGTCTGGCAGTATATACCTCACACTACTAC AAATTTATCTGAATCCCAATAAGACAACCAAGAACTTTGAGAAGAGAATCACCAATATAGTAGCTTCTCGAAGCACAAGCATTCCTAAGGCCAGTTCTGC GAGCAGTATTAAGACTAAAGGAGGCCGTGGAGGAAAGAAAATTGCTGCAATAGAAGGTGCAGAAGATGTACGTTTGAGTCCGAGTGGCACTGATAGCAGC AGGAGTGATGGTGATACAGACGAAATAACTGAGGAAGGCAGTTCTACTATTATGCATGATGAGGTGCTTGATCTGTTGGCCAAAAGGTGGGATAGAATAA ATGGAGCCCAAGCCCTGAGGCTTTTACCCAGGCAAACTAACTTACAGAACTTGCTTCCATTTCTCGGCCCTCTTCTGAGGAAATCCAGTGAAGCATACAG AAATCTTTCAGTAATCAAGAGTTTGAGACAGAGTGAGAATTTGCAGGTGAAAGATGAGCTATACAAATACAGAAAGCCAGTGGTGAAGATCACCGGCGAC AGTATGTGCTCCCTCTGCAACAAGAAGATTGGAACGAGCGTGTTTGCAGTCTATCCCAACGGGAAAACACTCGTCCATTTCGTCTGCTTTAGGGACTCCC AAAGCATGAAGGCCGTTGGTAAGGGCGCACAAACTCTGAGGAAGTGGTGA
AA sequence Show only first row Show all	>Lus10014310 pacid=23164759 polypeptide=Lus10014310 locus=Lus10014310.g ID=Lus10014310.BGIv1.0 annot-version=v1.0 MVHTAYDSFELLRGCPTKIDAVASYASKLLLACSDGALRVYAAESDRSPSTDYLGQAQELRKEAYVLERTVTGFSKKNLLSMEVLASRELLVSLSESIAF HRLPNLETFAVITKAKGANVYSWDDRRGYLCFARQKRVYIIRHDGRGFVEVKEFGVPDTVKSMSWCGENVCIGIKKEYVILNATSGALSEVFPSGRLAPP LVVSLPSGELLLGKIRSLRVPYPMIQTIVLQNVRRLVQSNNAVIVALDNSVHGLFPVPVGAQIVQLTASGNFEEALALCKLLPPEDASLRAAKEGSIHIR YAHHLFENGSYEEAMEHFLASQVEITYVLSMYPSIILPKTTLILESDKLVDSSPDAVQLSRGSSGASDDLDLSSASHLAEFDEHSALESKKMIHNTLMAL VKYLQKRRYSIIEKATAEGTEEVVLGAVGDNYGHYDSSRGRGNVAVNSGAREMAVILDTALLQALLLTGQSSASLELLRGHNYCDLKICEESLQKRNHFS ALLELYRSNSMHREALKLLHHLVEESSSGQSKIIHKFKPEDIIEYLKLLCGTDPMLVLESSMLILERCPTQTIELFLSGNIPADLVNSYLKQHAPNMQGR YLELMLAMNESAISGNLQNEMLQIYLSDVLDLYAELSGQQKWDEKAYSPARKKLLSALEGISGYNPETLLKRLPPDALCEERAILLGKMNQHELALSLYV HKLHLPDLALSYCDRVYESANPTKSGSIYLTLLQIYLNPNKTTKNFEKRITNIVASRSTSIPKASSASSIKTKGGRGGKKIAAIEGAEDVRLSPSGTDSS RSDGDTDEITEEGSSTIMHDEVLDLLAKRWDRINGAQALRLLPRQTNLQNLLPFLGPLLRKSSEAYRNLSVIKSLRQSENLQVKDELYKYRKPVVKITGD SMCSLCNKKIGTSVFAVYPNGKTLVHFVCFRDSQSMKAVGKGAQTLRKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10014310 [exp]	0	1
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011134 [exp]	2.4	0.9002
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10006378 [exp]	2.6	0.8823
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10009324 [exp]	3.2	0.8837
AT1G13940			Plant protein of unknown funct...		Lus10030419 [exp]	4.0	0.8916
AT5G42940			RING/U-box superfamily protein...		Lus10018725 [exp]	4.9	0.8834
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10043037 [exp]	5.5	0.8968
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10003405 [exp]	5.7	0.8985
AT4G32350			Regulator of Vps4 activity in ...		Lus10023635 [exp]	7.2	0.8564
AT1G58200		MSL3	MSCS-like 3 (.1.2)		Lus10012733 [exp]	9.8	0.8570
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10011568 [exp]	11.8	0.8632

Compare expression of checked genes

Lus10014310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.