Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50845 232 / 2e-79 Protein of unknown function (DUF59) (.1) AT1G68310 179 / 2e-58 AE7 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) AT3G09380 124 / 5e-37 Protein of unknown function (DUF59) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026019 [exp] 293 / 1e-103 AT3G50845 253 / 9e-88 Protein of unknown function (DUF59) (.1) Lus10031006 [exp] 173 / 3e-56 AT1G68310 233 / 1e-79 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Lus10035403 [exp] 172 / 9e-56 AT1G68310 230 / 7e-79 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Lus10035404 [exp] 135 / 1e-40 AT1G68310 199 / 8e-66 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Lus10031007 [exp] 62 / 5e-13 AT1G68310 70 / 2e-16 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G123100 [exp] 276 / 7e-97 AT3G50845 237 / 2e-81 Protein of unknown function (DUF59) (.1) Potri.001G135800 [exp] 190 / 6e-63 AT1G68310 243 / 8e-84 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Potri.003G098000 [exp] 183 / 6e-60 AT1G68310 257 / 2e-89 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0232 [flax] [poplar] NifU PF01883 [flax] [poplar] FeS_assembly_P Iron-sulfur cluster assembly protein
Representative CDS sequence Show only first row Show all	>Lus10014311 pacid=23164746 polypeptide=Lus10014311 locus=Lus10014311.g ID=Lus10014311.BGIv1.0 annot-version=v1.0 ATGACTCTGGGTCTGATCAATGCGAACCCAATCGTCCACGCCAAAAAGGAAAGGGTCGCCCGATGCGAAGATCCCCACTGCGATGATGCTGCTGTGGATC CGCTCGATATCTATGATTTCGTGAGGGACATAAGAGATCCTGAGCATCCTTATTCGCTGGAGCAGCTCAGTGTTCTTTCCGAGGAGTCCATTACTGTTGA TGACAAGCTCGGTCGCATCCTGATTACATTCACTCCCACCATTCAGCATTGTAGCATGGCCACTGTAATTGGTCTATGTCTCCGAGTGAAGCTGCAAGAA TGTTTTCCTCCTCATTACAAGGTTGACATAAAAGTTTCTCCCGGATCTCATGCCAATGAGGAAGCAGTCAACAAGCAGTTGAATGACAAGGAAAGAGTTG CTGCTGCTTTAGAGAACCCCAATCTACGTCAGCTCGTCGATGAGTGCCTCTACTCCAATGAACTCTGA
AA sequence Show only first row Show all	>Lus10014311 pacid=23164746 polypeptide=Lus10014311 locus=Lus10014311.g ID=Lus10014311.BGIv1.0 annot-version=v1.0 MTLGLINANPIVHAKKERVARCEDPHCDDAAVDPLDIYDFVRDIRDPEHPYSLEQLSVLSEESITVDDKLGRILITFTPTIQHCSMATVIGLCLRVKLQE CFPPHYKVDIKVSPGSHANEEAVNKQLNDKERVAAALENPNLRQLVDECLYSNEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50845			Protein of unknown function (D...		Lus10014311 [exp]	0	1
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10015066 [exp]	4.7	0.9655
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011980 [exp]	5.3	0.9132
AT3G05610			Plant invertase/pectin methyle...		Lus10015211 [exp]	6.9	0.9639
					Lus10006918 [exp]	8.3	0.9637
					Lus10025503 [exp]	8.4	0.9017
					Lus10021816 [exp]	8.9	0.8943
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	9.6	0.9637
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10041744 [exp]	10.6	0.8616
					Lus10040397 [exp]	10.7	0.9637
AT5G66930			unknown protein		Lus10000838 [exp]	10.9	0.8566

Compare expression of checked genes

Lus10014311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.